Gene annotation
Transcriptome id Sobic.004G294500.1
Synonym ATHEXPBETA1.1, Sb04g032840, ATEXPB4, EXPB4
Functional annotation expansin precursor, putative, expressed
UniProt C5XRX3
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45110 : expansin B4
RAP-DB (Rice) LOC_Os04g46630.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051986 , Zm00025a051981 , Zm00025a032217 , Zm00025a050515 , Zm00025a003339 , Zm00025a020874
Brachypodium KQJ97762 , PNT69178
Barley HORVU2Hr1G097480.1 , HORVU0Hr1G016380.2 , HORVU0Hr1G016380.3 , HORVU2Hr1G097480.2 , HORVU2Hr1G097480.3 , HORVU0Hr1G016380.4
Wheat TraesCS2D02G411000 , TraesCS6A02G249400 , TraesCS6A02G249700 , TraesCS2B02G432300 , TraesCS6A02G249400 , TraesCS6D02G231400 , TraesCS2A02G413600
Populus -


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cDNA sequences
Sobic.004G294500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G007500 DNA binding protein, putative, expressed -
2 Sobic.001G518700 DEF8 - Defensin and Defensin-like DEFL family, expressed -
3 Sobic.008G088450 - -
4 Sobic.008G088881 - -
5 Sobic.009G253800 aspartic proteinase, putative, expressed -
6 Sobic.006G062700 transferase family protein, putative, expressed -
7 Sobic.001G112250 - -
8 Sobic.003G024700 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.008G103066 - -
10 Sobic.002G141450 "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054) -
11 Sobic.005G225000 - -
12 Sobic.010G148600 WRKY31, expressed -
13 Sobic.002G091800 peptide transporter PTR2, putative, expressed -
14 Sobic.005G140400 - -
15 Sobic.003G156100 OsFBX117 - F-box domain containing protein, expressed -
16 Sobic.007G070700 OsFBX265 - F-box domain containing protein, expressed -
17 Sobic.010G136300 osMFT1 MFT-Like1 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
18 Sobic.010G219300 DEFL27 - Defensin and Defensin-like DEFL family -
19 Sobic.005G187100 - -
20 Sobic.005G199101 - K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8


Gene co-expression network
sample Sobic004G294500 Sobic004G294500 Sobic009G007500 Sobic009G007500 Sobic004G294500--Sobic009G007500 Sobic001G518700 Sobic001G518700 Sobic004G294500--Sobic001G518700 Sobic008G088450 Sobic008G088450 Sobic004G294500--Sobic008G088450 Sobic008G088881 Sobic008G088881 Sobic004G294500--Sobic008G088881 Sobic009G253800 Sobic009G253800 Sobic004G294500--Sobic009G253800 Sobic006G062700 Sobic006G062700 Sobic004G294500--Sobic006G062700 Sobic001G112250 Sobic001G112250 Sobic004G294500--Sobic001G112250 Sobic003G024700 Sobic003G024700 Sobic004G294500--Sobic003G024700 Sobic008G103066 Sobic008G103066 Sobic004G294500--Sobic008G103066 Sobic009G007500--Sobic008G088450 Sobic009G007500--Sobic004G294500 Sobic009G007500--Sobic001G518700 Sobic009G007500--Sobic006G062700 Sobic009G007500--Sobic008G103066 Sobic009G007500--Sobic001G112250 Sobic001G249233 Sobic001G249233 Sobic009G007500--Sobic001G249233 Sobic005G174900 Sobic005G174900 Sobic009G007500--Sobic005G174900 Sobic009G007500--Sobic003G024700 Sobic001G518700--Sobic009G007500 Sobic001G518700--Sobic004G294500 Sobic001G518700--Sobic001G112250 Sobic001G518700--Sobic008G088450 Sobic001G518700--Sobic008G103066 Sobic007G091200 Sobic007G091200 Sobic001G518700--Sobic007G091200 Sobic003G156100 Sobic003G156100 Sobic001G518700--Sobic003G156100 Sobic002G077600 Sobic002G077600 Sobic001G518700--Sobic002G077600 Sobic007G070700 Sobic007G070700 Sobic001G518700--Sobic007G070700 Sobic008G088450--Sobic009G007500 Sobic008G088450--Sobic006G062700 Sobic010G109700 Sobic010G109700 Sobic008G088450--Sobic010G109700 Sobic005G056100 Sobic005G056100 Sobic008G088450--Sobic005G056100 Sobic007G025300 Sobic007G025300 Sobic008G088450--Sobic007G025300 Sobic008G081000 Sobic008G081000 Sobic008G088450--Sobic008G081000 Sobic008G088450--Sobic001G249233 Sobic008G088450--Sobic008G103066 Sobic010G200400 Sobic010G200400 Sobic008G088450--Sobic010G200400 Sobic005G226150 Sobic005G226150 Sobic008G088881--Sobic005G226150 Sobic008G088881--Sobic009G007500 Sobic008G088881--Sobic006G062700 Sobic008G088881--Sobic008G088450 Sobic008G088881--Sobic001G112250 Sobic008G088881--Sobic008G103066 Sobic008G088881--Sobic007G070700 Sobic008G088881--Sobic005G174900 Sobic008G088881--Sobic001G249233 Sobic009G253800--Sobic004G294500 Sobic004G190200 Sobic004G190200 Sobic009G253800--Sobic004G190200 Sobic009G253800--Sobic009G007500 Sobic009G253800--Sobic007G091200 Sobic009G253800--Sobic001G518700 Sobic002G141450 Sobic002G141450 Sobic009G253800--Sobic002G141450 Sobic001G170500 Sobic001G170500 Sobic009G253800--Sobic001G170500 Sobic009G253800--Sobic008G088450 Sobic007G023600 Sobic007G023600 Sobic009G253800--Sobic007G023600 Sobic006G062700--Sobic005G174900 Sobic006G062700--Sobic001G249233 Sobic006G062700--Sobic008G103066 Sobic006G062700--Sobic007G025300 Sobic005G140400 Sobic005G140400 Sobic006G062700--Sobic005G140400 Sobic010G148600 Sobic010G148600 Sobic006G062700--Sobic010G148600 Sobic006G062700--Sobic001G112250 Sobic006G062700--Sobic007G070700 Sobic006G062700--Sobic010G109700 Sobic001G112250--Sobic008G103066 Sobic001G253501 Sobic001G253501 Sobic001G112250--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic001G112250--Sobic009G245750 Sobic001G112250--Sobic002G077600 Sobic001G112250--Sobic007G070700 Sobic009G001600 Sobic009G001600 Sobic001G112250--Sobic009G001600 Sobic003G247700 Sobic003G247700 Sobic001G112250--Sobic003G247700 Sobic002G211700 Sobic002G211700 Sobic001G112250--Sobic002G211700 Sobic001G535900 Sobic001G535900 Sobic001G112250--Sobic001G535900 Sobic010G219300 Sobic010G219300 Sobic003G024700--Sobic010G219300 Sobic010G034900 Sobic010G034900 Sobic003G024700--Sobic010G034900 Sobic003G024700--Sobic010G148600 Sobic003G024700--Sobic001G249233 Sobic003G024700--Sobic005G174900 Sobic003G024700--Sobic006G062700 Sobic003G024700--Sobic005G140400 Sobic001G096500 Sobic001G096500 Sobic003G024700--Sobic001G096500 Sobic003G024700--Sobic010G109700 Sobic008G103066--Sobic001G112250 Sobic008G103066--Sobic009G001600 Sobic008G103066--Sobic007G025300 Sobic008G103066--Sobic003G247700 Sobic008G103066--Sobic009G245750 Sobic008G103066--Sobic001G253501 Sobic008G103066--Sobic001G535900 Sobic008G103066--Sobic002G211700 Sobic008G103066--Sobic006G062700
Octagon: transcription factors


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