Gene annotation
Transcriptome id Sobic.001G518700.1
Synonym Sb01g048380, PDF2.2, LCR69
Functional annotation DEF8 - Defensin and Defensin-like DEFL family, expressed
UniProt C5WZX1
Pfam PF00304
Panther DB PTHR33147
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02100 : low-molecular-weight cysteine-rich 69
RAP-DB (Rice) LOC_Os02g41904.1 : DEF7 - Defensin and Defensin-like DEFL family, expressed
MaizeGDB (Corn) Zm00025a000423
Brachypodium KQK23833
Barley HORVU4Hr1G082400.2
Wheat TraesCS4D02G321000 , TraesCS4B02G324000
Populus -


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cDNA sequences
Sobic.001G518700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G007500 DNA binding protein, putative, expressed -
2 Sobic.004G294500 expansin precursor, putative, expressed -
3 Sobic.001G112250 - -
4 Sobic.008G088450 - -
5 Sobic.008G103066 - -
6 Sobic.007G091200 wax synthase isoform 1, putative, expressed -
7 Sobic.003G156100 OsFBX117 - F-box domain containing protein, expressed -
8 Sobic.002G077600 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.007G070700 OsFBX265 - F-box domain containing protein, expressed -
10 Sobic.006G062700 transferase family protein, putative, expressed -
11 Sobic.006G018400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
12 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
13 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
14 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
15 Sobic.008G088881 - -
16 Sobic.003G247700 cold acclimation protein WCOR413, putative, expressed -
17 Sobic.002G211700 storage protein(PubMedID : 16668596)@"kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@PROLM23 - Prolamin precursor, expressed -
18 Sobic.007G083300 paired amphipathic helix repeat-containing protein, putative, expressed -
19 Sobic.008G081700 - -
20 Sobic.009G245750 - -


Gene co-expression network
sample Sobic001G518700 Sobic001G518700 Sobic009G007500 Sobic009G007500 Sobic001G518700--Sobic009G007500 Sobic004G294500 Sobic004G294500 Sobic001G518700--Sobic004G294500 Sobic001G112250 Sobic001G112250 Sobic001G518700--Sobic001G112250 Sobic008G088450 Sobic008G088450 Sobic001G518700--Sobic008G088450 Sobic008G103066 Sobic008G103066 Sobic001G518700--Sobic008G103066 Sobic007G091200 Sobic007G091200 Sobic001G518700--Sobic007G091200 Sobic003G156100 Sobic003G156100 Sobic001G518700--Sobic003G156100 Sobic002G077600 Sobic002G077600 Sobic001G518700--Sobic002G077600 Sobic007G070700 Sobic007G070700 Sobic001G518700--Sobic007G070700 Sobic009G007500--Sobic008G088450 Sobic009G007500--Sobic004G294500 Sobic009G007500--Sobic001G518700 Sobic006G062700 Sobic006G062700 Sobic009G007500--Sobic006G062700 Sobic009G007500--Sobic008G103066 Sobic009G007500--Sobic001G112250 Sobic001G249233 Sobic001G249233 Sobic009G007500--Sobic001G249233 Sobic005G174900 Sobic005G174900 Sobic009G007500--Sobic005G174900 Sobic003G024700 Sobic003G024700 Sobic009G007500--Sobic003G024700 Sobic004G294500--Sobic009G007500 Sobic004G294500--Sobic001G518700 Sobic004G294500--Sobic008G088450 Sobic008G088881 Sobic008G088881 Sobic004G294500--Sobic008G088881 Sobic009G253800 Sobic009G253800 Sobic004G294500--Sobic009G253800 Sobic004G294500--Sobic006G062700 Sobic004G294500--Sobic001G112250 Sobic004G294500--Sobic003G024700 Sobic004G294500--Sobic008G103066 Sobic001G112250--Sobic008G103066 Sobic001G253501 Sobic001G253501 Sobic001G112250--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic001G112250--Sobic009G245750 Sobic001G112250--Sobic002G077600 Sobic001G112250--Sobic007G070700 Sobic009G001600 Sobic009G001600 Sobic001G112250--Sobic009G001600 Sobic003G247700 Sobic003G247700 Sobic001G112250--Sobic003G247700 Sobic002G211700 Sobic002G211700 Sobic001G112250--Sobic002G211700 Sobic001G535900 Sobic001G535900 Sobic001G112250--Sobic001G535900 Sobic008G088450--Sobic009G007500 Sobic008G088450--Sobic006G062700 Sobic010G109700 Sobic010G109700 Sobic008G088450--Sobic010G109700 Sobic005G056100 Sobic005G056100 Sobic008G088450--Sobic005G056100 Sobic007G025300 Sobic007G025300 Sobic008G088450--Sobic007G025300 Sobic008G081000 Sobic008G081000 Sobic008G088450--Sobic008G081000 Sobic008G088450--Sobic001G249233 Sobic008G088450--Sobic008G103066 Sobic010G200400 Sobic010G200400 Sobic008G088450--Sobic010G200400 Sobic008G103066--Sobic001G112250 Sobic008G103066--Sobic009G001600 Sobic008G103066--Sobic007G025300 Sobic008G103066--Sobic003G247700 Sobic008G103066--Sobic009G245750 Sobic008G103066--Sobic001G253501 Sobic008G103066--Sobic001G535900 Sobic008G103066--Sobic002G211700 Sobic008G103066--Sobic006G062700 Sobic009G033500 Sobic009G033500 Sobic007G091200--Sobic009G033500 Sobic007G091200--Sobic001G518700 Sobic007G091200--Sobic009G007500 Sobic007G091200--Sobic004G294500 Sobic003G189466 Sobic003G189466 Sobic007G091200--Sobic003G189466 Sobic008G081700 Sobic008G081700 Sobic007G091200--Sobic008G081700 Sobic007G091200--Sobic008G088450 Sobic010G118200 Sobic010G118200 Sobic007G091200--Sobic010G118200 Sobic007G091200--Sobic009G253800 Sobic008G064000 Sobic008G064000 Sobic003G156100--Sobic008G064000 Sobic001G297800 Sobic001G297800 Sobic003G156100--Sobic001G297800 Sobic006G018400 Sobic006G018400 Sobic003G156100--Sobic006G018400 Sobic003G156100--Sobic001G535900 Sobic003G156100--Sobic002G211700 Sobic007G083300 Sobic007G083300 Sobic003G156100--Sobic007G083300 Sobic003G156100--Sobic003G247700 Sobic002G367600 Sobic002G367600 Sobic003G156100--Sobic002G367600 Sobic005G188000 Sobic005G188000 Sobic003G156100--Sobic005G188000 Sobic002G077600--Sobic007G070700 Sobic002G077600--Sobic007G083300 Sobic002G077600--Sobic001G253501 Sobic002G077600--Sobic009G245750 Sobic002G077600--Sobic003G247700 Sobic002G077600--Sobic001G112250 Sobic002G077600--Sobic009G001600 Sobic002G077600--Sobic002G211700 Sobic007G049400 Sobic007G049400 Sobic002G077600--Sobic007G049400 Sobic007G070700--Sobic002G077600 Sobic007G070700--Sobic007G083300 Sobic007G070700--Sobic003G247700 Sobic007G070700--Sobic001G253501 Sobic007G070700--Sobic009G245750 Sobic007G070700--Sobic002G211700 Sobic007G070700--Sobic009G001600 Sobic007G070700--Sobic001G112250 SobicK043500 SobicK043500 Sobic007G070700--SobicK043500
Octagon: transcription factors


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