Gene annotation
Transcriptome id Sobic.007G083300.1
Synonym
Functional annotation paired amphipathic helix repeat-containing protein, putative, expressed
UniProt A0A1Z5R9S1
Pfam PF02671
Panther DB PTHR12346
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G27220 : paired amphipathic helix repeat-containing protein
RAP-DB (Rice) LOC_Os08g25200.1 : paired amphipathic helix repeat-containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G083300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G070700 OsFBX265 - F-box domain containing protein, expressed -
2 Sobic.002G077600 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.003G247700 cold acclimation protein WCOR413, putative, expressed -
4 Sobic.K043500 MYB family transcription factor, putative, expressed -
5 Sobic.002G211700 storage protein(PubMedID : 16668596)@"kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@PROLM23 - Prolamin precursor, expressed -
6 Sobic.001G253501 - -
7 Sobic.009G245750 - -
8 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
9 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
10 Sobic.009G186400 SSA1 - 2S albumin seed storage family protein precursor, expressed -
11 Sobic.007G049400 OsFBX381 - F-box domain containing protein, expressed -
12 Sobic.008G064000 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.001G112250 - -
14 Sobic.002G077500 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.008G103066 - -
16 Sobic.005G140400 - -
17 Sobic.006G018400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
18 Sobic.005G174900 - -
19 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
20 Sobic.005G112066 - -


Gene co-expression network
sample Sobic007G083300 Sobic007G083300 Sobic007G070700 Sobic007G070700 Sobic007G083300--Sobic007G070700 Sobic002G077600 Sobic002G077600 Sobic007G083300--Sobic002G077600 Sobic003G247700 Sobic003G247700 Sobic007G083300--Sobic003G247700 SobicK043500 SobicK043500 Sobic007G083300--SobicK043500 Sobic002G211700 Sobic002G211700 Sobic007G083300--Sobic002G211700 Sobic001G253501 Sobic001G253501 Sobic007G083300--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic007G083300--Sobic009G245750 Sobic009G001600 Sobic009G001600 Sobic007G083300--Sobic009G001600 Sobic001G535900 Sobic001G535900 Sobic007G083300--Sobic001G535900 Sobic007G070700--Sobic002G077600 Sobic007G070700--Sobic007G083300 Sobic007G070700--Sobic003G247700 Sobic007G070700--Sobic001G253501 Sobic007G070700--Sobic009G245750 Sobic007G070700--Sobic002G211700 Sobic007G070700--Sobic009G001600 Sobic001G112250 Sobic001G112250 Sobic007G070700--Sobic001G112250 Sobic007G070700--SobicK043500 Sobic002G077600--Sobic007G070700 Sobic002G077600--Sobic007G083300 Sobic002G077600--Sobic001G253501 Sobic002G077600--Sobic009G245750 Sobic002G077600--Sobic003G247700 Sobic002G077600--Sobic001G112250 Sobic002G077600--Sobic009G001600 Sobic002G077600--Sobic002G211700 Sobic007G049400 Sobic007G049400 Sobic002G077600--Sobic007G049400 Sobic003G247700--Sobic002G211700 Sobic003G247700--Sobic009G001600 Sobic003G247700--Sobic001G535900 Sobic003G247700--Sobic007G070700 Sobic003G247700--Sobic009G245750 Sobic003G247700--Sobic001G253501 Sobic003G247700--Sobic002G077600 Sobic003G247700--Sobic007G083300 Sobic008G103066 Sobic008G103066 Sobic003G247700--Sobic008G103066 SobicK043500--Sobic007G083300 SobicK043500--Sobic007G070700 Sobic009G186400 Sobic009G186400 SobicK043500--Sobic009G186400 SobicK043500--Sobic002G077600 SobicK043500--Sobic003G247700 Sobic002G077500 Sobic002G077500 SobicK043500--Sobic002G077500 SobicK043500--Sobic007G049400 SobicK043500--Sobic002G211700 SobicK043500--Sobic001G253501 Sobic002G211700--Sobic001G535900 Sobic002G211700--Sobic009G001600 Sobic002G211700--Sobic003G247700 Sobic002G367600 Sobic002G367600 Sobic002G211700--Sobic002G367600 Sobic002G211700--Sobic009G245750 Sobic002G211700--Sobic001G253501 Sobic002G211700--Sobic007G070700 Sobic002G211700--Sobic002G077600 Sobic001G297800 Sobic001G297800 Sobic002G211700--Sobic001G297800 Sobic001G253501--Sobic009G245750 Sobic001G253501--Sobic003G247700 Sobic001G253501--Sobic009G001600 Sobic001G253501--Sobic002G077600 Sobic001G253501--Sobic007G070700 Sobic001G253501--Sobic001G112250 Sobic001G253501--Sobic002G211700 Sobic001G253501--Sobic008G103066 Sobic001G253501--Sobic007G049400 Sobic009G245750--Sobic001G253501 Sobic009G245750--Sobic003G247700 Sobic009G245750--Sobic009G001600 Sobic009G245750--Sobic002G077600 Sobic009G245750--Sobic007G070700 Sobic009G245750--Sobic001G112250 Sobic009G245750--Sobic002G211700 Sobic009G245750--Sobic008G103066 Sobic009G245750--Sobic007G049400 Sobic009G001600--Sobic002G211700 Sobic009G001600--Sobic001G535900 Sobic009G001600--Sobic003G247700 Sobic009G001600--Sobic009G245750 Sobic009G001600--Sobic001G253501 Sobic009G001600--Sobic002G367600 Sobic009G001600--Sobic008G103066 Sobic009G001600--Sobic002G077600 Sobic009G001600--Sobic007G070700 Sobic001G535900--Sobic002G211700 Sobic001G535900--Sobic009G001600 Sobic001G535900--Sobic002G367600 Sobic001G535900--Sobic003G247700 Sobic001G535900--Sobic001G297800 Sobic002G028100 Sobic002G028100 Sobic001G535900--Sobic002G028100 Sobic001G535900--Sobic008G103066 Sobic001G535900--Sobic009G245750 Sobic001G535900--Sobic001G253501
Octagon: transcription factors


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