Gene annotation
Transcriptome id Sobic.004G035800.1
Synonym LRX1
Functional annotation uncharacterized protein At4g06744 precursor, putative, expressed
UniProt A0A194YNL2
Pfam PF13855
Panther DB PTHR32093 PTHR32093:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G12040 : leucine-rich repeat/extensin 1
RAP-DB (Rice) LOC_Os06g49100.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a037054 , Zm00025a035770 , Zm00025a043105 , Zm00025a023166 , Zm00025a018931 , Zm00025a041768
Brachypodium KQK07141 , KQK17443 , PNT72312 , PNT62583 , KQK07207 , KQJ93239
Barley HORVU1Hr1G002420.3 , HORVU1Hr1G002420.2 , HORVU1Hr1G002420.1 , HORVU1Hr1G002420.6 , HORVU1Hr1G002420.5 , HORVU1Hr1G002420.4 , HORVU6Hr1G019290.6 , HORVU6Hr1G019290.5 , HORVU6Hr1G019290.4 , HORVU6Hr1G019290.3 , HORVU6Hr1G019290.2 , HORVU6Hr1G019290.1 , HORVU7Hr1G096310.3 , HORVU3Hr1G051610.2 , HORVU3Hr1G051610.3 , HORVU3Hr1G051610.1 , HORVU3Hr1G051610.4 , HORVU1Hr1G026650.2 , HORVU1Hr1G026650.3 , HORVU1Hr1G026650.1 , HORVU1Hr1G026650.6 , HORVU1Hr1G026650.4 , HORVU1Hr1G026650.5
Wheat TraesCS3D02G119800 , TraesCS6B02G136600 , TraesCS6A02G108000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G345800 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
3 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
4 Sobic.005G163500 dnaJ domain containing protein, expressed -
5 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.001G171200 expressed protein -
7 Sobic.001G101900 SCP-like extracellular protein, expressed -
8 Sobic.001G463301 - -
9 Sobic.002G237000 fasciclin domain containing protein, expressed -
10 Sobic.004G234600 expressed protein -
11 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
12 Sobic.006G097300 F-box protein FBW2, putative, expressed -
13 Sobic.003G020800 - -
14 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
15 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
16 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
18 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
19 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
20 Sobic.001G457600 piwi domain containing protein, expressed -


Gene co-expression network
sample Sobic004G035800 Sobic004G035800 Sobic002G345800 Sobic002G345800 Sobic004G035800--Sobic002G345800 Sobic010G183800 Sobic010G183800 Sobic004G035800--Sobic010G183800 Sobic003G204200 Sobic003G204200 Sobic004G035800--Sobic003G204200 Sobic005G163500 Sobic005G163500 Sobic004G035800--Sobic005G163500 Sobic010G255000 Sobic010G255000 Sobic004G035800--Sobic010G255000 Sobic001G171200 Sobic001G171200 Sobic004G035800--Sobic001G171200 Sobic001G101900 Sobic001G101900 Sobic004G035800--Sobic001G101900 Sobic001G463301 Sobic001G463301 Sobic004G035800--Sobic001G463301 Sobic002G237000 Sobic002G237000 Sobic004G035800--Sobic002G237000 Sobic002G345800--Sobic004G035800 Sobic003G191600 Sobic003G191600 Sobic002G345800--Sobic003G191600 Sobic002G345800--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic002G345800--Sobic006G097300 Sobic004G220200 Sobic004G220200 Sobic002G345800--Sobic004G220200 Sobic001G116600 Sobic001G116600 Sobic002G345800--Sobic001G116600 Sobic005G166100 Sobic005G166100 Sobic002G345800--Sobic005G166100 Sobic002G345800--Sobic001G463301 Sobic001G086400 Sobic001G086400 Sobic002G345800--Sobic001G086400 Sobic003G092300 Sobic003G092300 Sobic010G183800--Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic010G183800--Sobic001G459400 Sobic002G078900 Sobic002G078900 Sobic010G183800--Sobic002G078900 Sobic003G300000 Sobic003G300000 Sobic010G183800--Sobic003G300000 Sobic001G456000 Sobic001G456000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic001G071600 Sobic001G071600 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic001G106500 Sobic001G106500 Sobic010G183800--Sobic001G106500 Sobic003G204200--Sobic002G237000 Sobic004G321400 Sobic004G321400 Sobic003G204200--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic003G204200--Sobic001G105800 Sobic003G204200--Sobic010G255000 Sobic003G204200--Sobic004G035800 Sobic009G172950 Sobic009G172950 Sobic003G204200--Sobic009G172950 Sobic010G092400 Sobic010G092400 Sobic003G204200--Sobic010G092400 Sobic004G190500 Sobic004G190500 Sobic003G204200--Sobic004G190500 Sobic002G223900 Sobic002G223900 Sobic003G204200--Sobic002G223900 Sobic005G163500--Sobic001G071600 Sobic004G281000 Sobic004G281000 Sobic005G163500--Sobic004G281000 Sobic009G243000 Sobic009G243000 Sobic005G163500--Sobic009G243000 Sobic005G163500--Sobic010G183800 Sobic001G457600 Sobic001G457600 Sobic005G163500--Sobic001G457600 Sobic005G163500--Sobic001G456000 Sobic007G121200 Sobic007G121200 Sobic005G163500--Sobic007G121200 Sobic005G163500--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic005G163500--Sobic003G046400 Sobic007G147200 Sobic007G147200 Sobic010G255000--Sobic007G147200 Sobic001G101700 Sobic001G101700 Sobic010G255000--Sobic001G101700 Sobic007G201900 Sobic007G201900 Sobic010G255000--Sobic007G201900 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic010G255000--Sobic001G106500 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800 Sobic001G171200--Sobic004G220200 Sobic001G171200--Sobic006G097300 Sobic007G128200 Sobic007G128200 Sobic001G171200--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G171200--Sobic004G234600 Sobic002G121900 Sobic002G121900 Sobic001G171200--Sobic002G121900 Sobic007G193300 Sobic007G193300 Sobic001G171200--Sobic007G193300 Sobic010G194600 Sobic010G194600 Sobic001G171200--Sobic010G194600 Sobic001G171200--Sobic001G086400 Sobic001G171200--Sobic001G457600 Sobic006G163300 Sobic006G163300 Sobic001G101900--Sobic006G163300 Sobic001G101900--Sobic007G147200 Sobic006G274200 Sobic006G274200 Sobic001G101900--Sobic006G274200 Sobic010G070900 Sobic010G070900 Sobic001G101900--Sobic010G070900 Sobic003G019900 Sobic003G019900 Sobic001G101900--Sobic003G019900 Sobic002G360600 Sobic002G360600 Sobic001G101900--Sobic002G360600 Sobic004G003700 Sobic004G003700 Sobic001G101900--Sobic004G003700 Sobic009G087700 Sobic009G087700 Sobic001G101900--Sobic009G087700 Sobic003G002000 Sobic003G002000 Sobic001G101900--Sobic003G002000 Sobic001G463301--Sobic003G300000 Sobic001G463301--Sobic010G183800 Sobic001G463301--Sobic003G092300 Sobic001G463301--Sobic009G063700 Sobic001G463301--Sobic001G459400 Sobic001G463301--Sobic001G158100 Sobic009G075500 Sobic009G075500 Sobic001G463301--Sobic009G075500 Sobic001G463301--Sobic002G078900 Sobic001G463301--Sobic004G234600 Sobic006G228000 Sobic006G228000 Sobic002G237000--Sobic006G228000 Sobic001G137800 Sobic001G137800 Sobic002G237000--Sobic001G137800 Sobic001G216400 Sobic001G216400 Sobic002G237000--Sobic001G216400 Sobic002G237000--Sobic009G075500 Sobic007G043000 Sobic007G043000 Sobic002G237000--Sobic007G043000 Sobic001G235200 Sobic001G235200 Sobic002G237000--Sobic001G235200 Sobic002G237000--Sobic003G204200 Sobic002G237000--Sobic004G234600 Sobic002G237000--Sobic003G092300
Octagon: transcription factors


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