Gene annotation
Transcriptome id Sobic.003G250100.2,Sobic.003G250100.3,Sobic.003G250100.1
Synonym HB-3, WOX9, STIP
Functional annotation homeobox domain containing protein, expressed
UniProt A0A1W0VYV6 , A0A1W0VYT4 , C5XG06
Pfam PF00046
Panther DB PTHR24326 PTHR24326:SF212
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT2G33880 : homeobox-3
RAP-DB (Rice) LOC_Os01g47710.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049196 , Zm00025a038759 , Zm00025a054984 , Zm00025a028123 , Zm00025a044576 , Zm00025a052470 , Zm00025a002274
Brachypodium KQK14583 , KQK04862 , KQK21876 , KQJ95743 , KQK09100
Barley HORVU3Hr1G060950.1 , HORVU3Hr1G060950.3 , HORVU3Hr1G060950.2 , HORVU1Hr1G087950.1 , HORVU1Hr1G087950.2 , HORVU2Hr1G017270.9 , HORVU2Hr1G017270.8 , HORVU2Hr1G017270.3 , HORVU2Hr1G017270.2 , HORVU2Hr1G017270.1 , HORVU2Hr1G017270.7 , HORVU2Hr1G017270.6 , HORVU2Hr1G017270.5 , HORVU2Hr1G017270.4
Wheat TraesCS4B02G174400 , TraesCS1D02G406900 , TraesCS3B02G272200 , TraesCS2B02G117900 , TraesCS1B02G427400 , TraesCS3D02G244300 , TraesCS1A02G399400 , TraesCS4D02G176400 , TraesCS2A02G100700 , TraesCS4A02G130200 , TraesCS2D02G100200 , TraesCS3A02G247200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G234600 expressed protein -
2 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
4 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
5 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
6 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
7 Sobic.002G078900 agenet domain containing protein, expressed -
8 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
9 Sobic.001G457600 piwi domain containing protein, expressed -
10 Sobic.005G163500 dnaJ domain containing protein, expressed -
11 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
12 Sobic.007G201900 expressed protein -
13 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
14 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
15 Sobic.003G300000 expressed protein -
16 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
17 Sobic.004G232100 expressed protein -
18 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
19 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.003G191600 expressed protein -


Gene co-expression network
sample Sobic003G250100 Sobic003G250100 Sobic004G234600 Sobic004G234600 Sobic003G250100--Sobic004G234600 Sobic004G281000 Sobic004G281000 Sobic003G250100--Sobic004G281000 Sobic010G183800 Sobic010G183800 Sobic003G250100--Sobic010G183800 Sobic002G196500 Sobic002G196500 Sobic003G250100--Sobic002G196500 Sobic001G456000 Sobic001G456000 Sobic003G250100--Sobic001G456000 Sobic010G255000 Sobic010G255000 Sobic003G250100--Sobic010G255000 Sobic002G078900 Sobic002G078900 Sobic003G250100--Sobic002G078900 Sobic001G071600 Sobic001G071600 Sobic003G250100--Sobic001G071600 Sobic001G457600 Sobic001G457600 Sobic003G250100--Sobic001G457600 Sobic007G128200 Sobic007G128200 Sobic004G234600--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic004G234600--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic004G234600--Sobic009G063700 Sobic002G053350 Sobic002G053350 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic001G419500 Sobic001G419500 Sobic004G234600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic004G234600--Sobic010G194600 Sobic001G158100 Sobic001G158100 Sobic004G234600--Sobic001G158100 Sobic004G234600--Sobic010G183800 Sobic004G281000--Sobic010G183800 Sobic003G300000 Sobic003G300000 Sobic004G281000--Sobic003G300000 Sobic009G075500 Sobic009G075500 Sobic004G281000--Sobic009G075500 Sobic004G281000--Sobic002G078900 Sobic004G281000--Sobic004G234600 Sobic004G281000--Sobic001G456000 Sobic004G281000--Sobic001G457600 Sobic004G281000--Sobic001G071600 Sobic004G281000--Sobic001G216400 Sobic003G092300 Sobic003G092300 Sobic010G183800--Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic010G183800--Sobic001G158100 Sobic001G106500 Sobic001G106500 Sobic010G183800--Sobic001G106500 Sobic002G196500--Sobic003G250100 Sobic001G468000 Sobic001G468000 Sobic002G196500--Sobic001G468000 Sobic006G272800 Sobic006G272800 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic001G171100 Sobic001G171100 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic001G456000--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G456000--Sobic010G048600 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic005G070700 Sobic005G070700 Sobic001G456000--Sobic005G070700 Sobic003G243100 Sobic003G243100 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic007G147200 Sobic007G147200 Sobic010G255000--Sobic007G147200 Sobic001G101700 Sobic001G101700 Sobic010G255000--Sobic001G101700 Sobic010G255000--Sobic007G201900 Sobic003G046400 Sobic003G046400 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic010G255000--Sobic001G106500 Sobic007G121200 Sobic007G121200 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic009G243000 Sobic009G243000 Sobic002G078900--Sobic009G243000 Sobic006G271600 Sobic006G271600 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic009G048300 Sobic009G048300 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic001G071600--Sobic004G281000 Sobic001G137500 Sobic001G137500 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G457600--Sobic002G258000 Sobic001G457600--Sobic007G128200 Sobic001G457600--Sobic004G234600 Sobic001G457600--Sobic009G063700 Sobic001G457600--Sobic004G281000 Sobic007G193300 Sobic007G193300 Sobic001G457600--Sobic007G193300
Octagon: transcription factors


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