Gene annotation
Transcriptome id Sobic.001G118800.1
Synonym AHP2, Sb01g010480
Functional annotation homologous-pairing protein meu13, putative, expressed
UniProt C5WN49
Pfam PF07106
Panther DB PTHR15938
NCBI CDD KOG4603; TBP-1 interacting protein
KEGG Orthology K06695; 26S proteasome regulatory subunit, ATPase 3, interacting protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13330 : Arabidopsis Hop2 homolog
RAP-DB (Rice) LOC_Os03g50220.1 : homologous-pairing protein meu13, putative, expressed
MaizeGDB (Corn) Zm00025a017006
Brachypodium KQK13602
Barley HORVU4Hr1G007340.8 , HORVU4Hr1G007340.4 , HORVU4Hr1G007340.5 , HORVU4Hr1G007340.6 , HORVU4Hr1G007340.7 , HORVU4Hr1G007340.1 , HORVU4Hr1G007340.2 , HORVU4Hr1G007340.3 , HORVU4Hr1G007340.9
Wheat TraesCS4D02G044700 , TraesCS4A02G269200 , TraesCS4B02G045000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G121650 - -
2 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
3 Sobic.003G055600 expressed protein -
4 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
5 Sobic.002G190000 ZOS9-05 - C2H2 zinc finger protein, expressed -
6 Sobic.004G190500 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed K15378: solute carrier family 45, member 1/2/4
7 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
8 Sobic.004G317000 growth regulating factor protein, putative, expressed -
9 Sobic.007G121600 - -
10 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
11 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
12 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
13 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
14 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
15 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
16 Sobic.001G013400 nuf2 family protein, expressed -
17 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
18 Sobic.004G238801 - -
19 Sobic.005G157300 protein binding protein, putative, expressed -
20 Sobic.004G321400 BRUSHY 1, putative, expressed -


Gene co-expression network
sample Sobic001G118800 Sobic001G118800 Sobic007G121650 Sobic007G121650 Sobic001G118800--Sobic007G121650 Sobic001G238900 Sobic001G238900 Sobic001G118800--Sobic001G238900 Sobic003G055600 Sobic003G055600 Sobic001G118800--Sobic003G055600 Sobic003G244000 Sobic003G244000 Sobic001G118800--Sobic003G244000 Sobic002G190000 Sobic002G190000 Sobic001G118800--Sobic002G190000 Sobic004G190500 Sobic004G190500 Sobic001G118800--Sobic004G190500 Sobic003G204200 Sobic003G204200 Sobic001G118800--Sobic003G204200 Sobic004G317000 Sobic004G317000 Sobic001G118800--Sobic004G317000 Sobic007G121600 Sobic007G121600 Sobic001G118800--Sobic007G121600 Sobic007G121650--Sobic007G121600 Sobic004G238801 Sobic004G238801 Sobic007G121650--Sobic004G238801 Sobic007G007800 Sobic007G007800 Sobic007G121650--Sobic007G007800 Sobic003G129200 Sobic003G129200 Sobic007G121650--Sobic003G129200 Sobic003G374100 Sobic003G374100 Sobic007G121650--Sobic003G374100 Sobic007G121650--Sobic001G118800 Sobic010G204700 Sobic010G204700 Sobic007G121650--Sobic010G204700 Sobic005G020100 Sobic005G020100 Sobic007G121650--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G121650--Sobic010G092400 Sobic001G238900--Sobic003G244000 Sobic002G230800 Sobic002G230800 Sobic001G238900--Sobic002G230800 Sobic001G105800 Sobic001G105800 Sobic001G238900--Sobic001G105800 Sobic002G246900 Sobic002G246900 Sobic001G238900--Sobic002G246900 Sobic002G223900 Sobic002G223900 Sobic001G238900--Sobic002G223900 Sobic009G109300 Sobic009G109300 Sobic001G238900--Sobic009G109300 Sobic001G238900--Sobic004G317000 Sobic001G238900--Sobic001G118800 Sobic001G169800 Sobic001G169800 Sobic001G238900--Sobic001G169800 Sobic001G377700 Sobic001G377700 Sobic003G055600--Sobic001G377700 Sobic005G157300 Sobic005G157300 Sobic003G055600--Sobic005G157300 Sobic009G143200 Sobic009G143200 Sobic003G055600--Sobic009G143200 Sobic003G183700 Sobic003G183700 Sobic003G055600--Sobic003G183700 Sobic004G321400 Sobic004G321400 Sobic003G055600--Sobic004G321400 Sobic009G172950 Sobic009G172950 Sobic003G055600--Sobic009G172950 Sobic002G021200 Sobic002G021200 Sobic003G055600--Sobic002G021200 Sobic005G110535 Sobic005G110535 Sobic003G055600--Sobic005G110535 Sobic003G055600--Sobic007G007800 Sobic003G244000--Sobic001G238900 Sobic001G054700 Sobic001G054700 Sobic003G244000--Sobic001G054700 Sobic007G201900 Sobic007G201900 Sobic003G244000--Sobic007G201900 Sobic003G244000--Sobic002G230800 Sobic002G351100 Sobic002G351100 Sobic003G244000--Sobic002G351100 Sobic003G244000--Sobic001G118800 Sobic003G244000--Sobic009G143200 Sobic003G244000--Sobic005G157300 Sobic003G244000--Sobic004G317000 Sobic002G190000--Sobic003G055600 Sobic002G190000--Sobic001G377700 Sobic002G190000--Sobic001G238900 Sobic002G190000--Sobic005G110535 Sobic004G053900 Sobic004G053900 Sobic002G190000--Sobic004G053900 Sobic002G290000 Sobic002G290000 Sobic002G190000--Sobic002G290000 Sobic002G190000--Sobic001G118800 Sobic002G190000--Sobic002G246900 Sobic001G013400 Sobic001G013400 Sobic002G190000--Sobic001G013400 Sobic002G112000 Sobic002G112000 Sobic004G190500--Sobic002G112000 Sobic004G190500--Sobic002G190000 Sobic004G190500--Sobic004G321400 Sobic002G317700 Sobic002G317700 Sobic004G190500--Sobic002G317700 Sobic004G190500--Sobic003G204200 Sobic004G190500--Sobic004G317000 Sobic004G190500--Sobic001G118800 Sobic004G190500--Sobic007G121650 Sobic004G190500--Sobic009G143200 Sobic002G237000 Sobic002G237000 Sobic003G204200--Sobic002G237000 Sobic003G204200--Sobic004G321400 Sobic003G204200--Sobic001G105800 Sobic010G255000 Sobic010G255000 Sobic003G204200--Sobic010G255000 Sobic004G035800 Sobic004G035800 Sobic003G204200--Sobic004G035800 Sobic003G204200--Sobic009G172950 Sobic003G204200--Sobic010G092400 Sobic003G204200--Sobic004G190500 Sobic003G204200--Sobic002G223900 Sobic004G317000--Sobic009G143200 Sobic007G187700 Sobic007G187700 Sobic004G317000--Sobic007G187700 Sobic001G104500 Sobic001G104500 Sobic004G317000--Sobic001G104500 Sobic006G196600 Sobic006G196600 Sobic004G317000--Sobic006G196600 Sobic003G282500 Sobic003G282500 Sobic004G317000--Sobic003G282500 Sobic004G317000--Sobic001G238900 Sobic004G317000--Sobic001G054700 Sobic004G317000--Sobic002G223900 Sobic004G282601 Sobic004G282601 Sobic004G317000--Sobic004G282601 Sobic007G121600--Sobic007G121650 Sobic005G062600 Sobic005G062600 Sobic007G121600--Sobic005G062600 Sobic007G121600--Sobic010G092400 Sobic009G184200 Sobic009G184200 Sobic007G121600--Sobic009G184200 Sobic002G050700 Sobic002G050700 Sobic007G121600--Sobic002G050700 Sobic007G121600--Sobic002G317700 Sobic003G393100 Sobic003G393100 Sobic007G121600--Sobic003G393100 Sobic007G121600--Sobic002G021200 Sobic007G121600--Sobic004G317000
Octagon: transcription factors


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