Gene annotation
Transcriptome id Sobic.001G163300.1,Sobic.001G163300.2
Synonym Sb01g014280, ATARI1, ARI1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
zinc finger protein-related, putative, expressed
UniProt A0A1Z5S683 , C5WS70
Pfam PF01485
Panther DB PTHR11685 PTHR11685:SF150
NCBI CDD KOG1815; Predicted E3 ubiquitin ligase
KEGG Orthology K11968; ariadne-1
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT4G34370 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g42760.1 : zinc finger protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a017293
Brachypodium KQK14129
Barley HORVU4Hr1G011770.6 , HORVU4Hr1G011770.7 , HORVU4Hr1G011770.4 , HORVU4Hr1G011770.5 , HORVU4Hr1G011770.2 , HORVU4Hr1G011770.3 , HORVU4Hr1G011770.1 , HORVU4Hr1G011770.8 , HORVU4Hr1G011910.8 , HORVU4Hr1G011910.9 , HORVU4Hr1G011910.6 , HORVU4Hr1G011910.7 , HORVU4Hr1G011910.4 , HORVU4Hr1G011910.5 , HORVU4Hr1G011910.2 , HORVU4Hr1G011910.3 , HORVU4Hr1G011910.1
Wheat TraesCS4B02G070800 , TraesCS4B02G071800 , TraesCS4B02G071800 , TraesCS4D02G070600 , TraesCS4A02G243200 , TraesCS4D02G069600 , TraesCS4A02G244200
Populus -


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cDNA sequences
Sobic.001G163300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G152600 RIO1 family protein, expressed -
2 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
3 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
4 Sobic.001G316900 bZIP family transcription factor, putative, expressed -
5 Sobic.008G010900 DNA repair protein Rad51, putative, expressed K10872: meiotic recombination protein DMC1
6 Sobic.006G200200 expressed protein -
7 Sobic.008G094800 OsFBX125 - F-box domain containing protein, expressed -
8 Sobic.003G144200 Homeobox domain containing protein, expressed -
9 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
10 Sobic.002G400300 expressed protein -
11 Sobic.002G257900 Highest expression level in primordial inflorescence(PubMedID : 27501690)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659857)@OsSPL18 - SBP-box gene family member, expressed -
12 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
13 Sobic.002G342100 no apical meristem protein, putative, expressed -
14 Sobic.006G223800 ZOS8-01 - C2H2 zinc finger protein, expressed -
15 Sobic.005G202000 expressed protein -
16 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
17 Sobic.006G078350 - -
18 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
19 Sobic.001G469600 "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed -
20 Sobic.001G112000 3,4-dihydroxy-2-butanone kinase, putative, expressed K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)


Gene co-expression network
sample Sobic001G163300 Sobic001G163300 Sobic001G152600 Sobic001G152600 Sobic001G163300--Sobic001G152600 Sobic001G217300 Sobic001G217300 Sobic001G163300--Sobic001G217300 Sobic003G017200 Sobic003G017200 Sobic001G163300--Sobic003G017200 Sobic001G316900 Sobic001G316900 Sobic001G163300--Sobic001G316900 Sobic008G010900 Sobic008G010900 Sobic001G163300--Sobic008G010900 Sobic006G200200 Sobic006G200200 Sobic001G163300--Sobic006G200200 Sobic008G094800 Sobic008G094800 Sobic001G163300--Sobic008G094800 Sobic003G144200 Sobic003G144200 Sobic001G163300--Sobic003G144200 Sobic006G017600 Sobic006G017600 Sobic001G163300--Sobic006G017600 Sobic008G161100 Sobic008G161100 Sobic001G152600--Sobic008G161100 Sobic001G152600--Sobic001G163300 Sobic001G137400 Sobic001G137400 Sobic001G152600--Sobic001G137400 Sobic005G202000 Sobic005G202000 Sobic001G152600--Sobic005G202000 Sobic003G191600 Sobic003G191600 Sobic001G152600--Sobic003G191600 Sobic003G207000 Sobic003G207000 Sobic001G152600--Sobic003G207000 Sobic001G152600--Sobic001G217300 Sobic005G166100 Sobic005G166100 Sobic001G152600--Sobic005G166100 Sobic008G098700 Sobic008G098700 Sobic001G152600--Sobic008G098700 Sobic001G217300--Sobic001G163300 Sobic001G217300--Sobic005G202000 Sobic003G031500 Sobic003G031500 Sobic001G217300--Sobic003G031500 Sobic001G217300--Sobic001G152600 Sobic001G217300--Sobic001G316900 Sobic004G262600 Sobic004G262600 Sobic001G217300--Sobic004G262600 Sobic003G356300 Sobic003G356300 Sobic001G217300--Sobic003G356300 Sobic003G223900 Sobic003G223900 Sobic001G217300--Sobic003G223900 Sobic006G203400 Sobic006G203400 Sobic001G217300--Sobic006G203400 Sobic001G106000 Sobic001G106000 Sobic003G017200--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic007G153001 Sobic007G153001 Sobic003G017200--Sobic007G153001 Sobic003G017200--Sobic006G200200 Sobic009G128300 Sobic009G128300 Sobic003G017200--Sobic009G128300 Sobic003G017200--Sobic003G144200 Sobic003G083000 Sobic003G083000 Sobic003G017200--Sobic003G083000 Sobic002G182800 Sobic002G182800 Sobic003G017200--Sobic002G182800 Sobic001G316900--Sobic003G144200 Sobic001G061900 Sobic001G061900 Sobic001G316900--Sobic001G061900 Sobic001G316900--Sobic003G017200 Sobic009G170100 Sobic009G170100 Sobic001G316900--Sobic009G170100 Sobic006G110000 Sobic006G110000 Sobic001G316900--Sobic006G110000 Sobic002G068800 Sobic002G068800 Sobic001G316900--Sobic002G068800 Sobic001G157400 Sobic001G157400 Sobic001G316900--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic001G316900--Sobic009G159900 Sobic009G037800 Sobic009G037800 Sobic001G316900--Sobic009G037800 Sobic006G223800 Sobic006G223800 Sobic008G010900--Sobic006G223800 Sobic008G010900--Sobic006G017600 Sobic001G112000 Sobic001G112000 Sobic008G010900--Sobic001G112000 Sobic006G199700 Sobic006G199700 Sobic008G010900--Sobic006G199700 Sobic004G101500 Sobic004G101500 Sobic008G010900--Sobic004G101500 Sobic008G010900--Sobic002G342100 Sobic003G409800 Sobic003G409800 Sobic008G010900--Sobic003G409800 Sobic005G110421 Sobic005G110421 Sobic008G010900--Sobic005G110421 Sobic010G090700 Sobic010G090700 Sobic008G010900--Sobic010G090700 Sobic006G200200--Sobic003G017200 Sobic006G200200--Sobic003G083000 Sobic007G169600 Sobic007G169600 Sobic006G200200--Sobic007G169600 Sobic001G075101 Sobic001G075101 Sobic006G200200--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic006G200200--Sobic002G331450 Sobic002G037400 Sobic002G037400 Sobic006G200200--Sobic002G037400 Sobic006G200200--Sobic002G182800 Sobic006G203000 Sobic006G203000 Sobic006G200200--Sobic006G203000 Sobic002G325600 Sobic002G325600 Sobic006G200200--Sobic002G325600 Sobic008G094800--Sobic001G152600 Sobic005G022300 Sobic005G022300 Sobic008G094800--Sobic005G022300 Sobic008G094800--Sobic001G163300 Sobic003G092500 Sobic003G092500 Sobic008G094800--Sobic003G092500 Sobic009G057600 Sobic009G057600 Sobic008G094800--Sobic009G057600 Sobic008G094800--Sobic003G356300 Sobic008G094800--Sobic005G202000 Sobic007G127950 Sobic007G127950 Sobic008G094800--Sobic007G127950 Sobic001G138900 Sobic001G138900 Sobic008G094800--Sobic001G138900 Sobic003G144200--Sobic003G017200 Sobic002G023900 Sobic002G023900 Sobic003G144200--Sobic002G023900 Sobic003G144200--Sobic001G157400 Sobic003G144200--Sobic009G159900 Sobic001G050800 Sobic001G050800 Sobic003G144200--Sobic001G050800 Sobic003G144200--Sobic001G316900 Sobic003G144200--Sobic001G106000 Sobic003G144200--Sobic009G170100 Sobic003G144200--Sobic007G153001 Sobic006G017600--Sobic008G010900 Sobic006G017600--Sobic006G223800 Sobic006G017600--Sobic005G202000 Sobic006G017600--Sobic004G101500 Sobic006G017600--Sobic010G090700 Sobic004G040800 Sobic004G040800 Sobic006G017600--Sobic004G040800 Sobic006G017600--Sobic001G152600 Sobic006G017600--Sobic008G098700 Sobic006G181500 Sobic006G181500 Sobic006G017600--Sobic006G181500
Octagon: transcription factors


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