Gene annotation
Transcriptome id Sobic.006G017600.3,Sobic.006G017600.2
Synonym NRPE9A, NRPB9A, Sb06g001670, NRPD9A
Functional annotation DNA-directed RNA polymerase II subunit RPB9, putative, expressed
UniProt C5YC89
Pfam PF02150 PF01096
Panther DB PTHR11239 PTHR11239:SF15
NCBI CDD KOG2691; RNA polymerase II subunit 9
KEGG Orthology K03017; RPB9, DNA-directed RNA polymerase II subunit RPB9
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding GO:0008270zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G16980 : RNA polymerases M/15 Kd subunit
RAP-DB (Rice) LOC_Os12g37370.1 : DNA-directed RNA polymerase II subunit RPB9, putative, expressed
MaizeGDB (Corn) Zm00025a025480
Brachypodium PNT78390
Barley HORVU4Hr1G088340.50 , HORVU4Hr1G088340.53 , HORVU4Hr1G088340.52 , HORVU4Hr1G088340.55 , HORVU4Hr1G088340.54 , HORVU4Hr1G088340.57 , HORVU4Hr1G088340.49
Wheat TraesCS5A02G540000 , TraesCS4B02G374000
Populus -


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cDNA sequences
Sobic.006G017600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G010900 DNA repair protein Rad51, putative, expressed K10872: meiotic recombination protein DMC1
2 Sobic.006G223800 ZOS8-01 - C2H2 zinc finger protein, expressed -
3 Sobic.005G202000 expressed protein -
4 Sobic.004G101500 DNA binding protein, putative, expressed K10639: CCNB1IP1, E3 ubiquitin-protein ligase CCNP1IP1
5 Sobic.010G090700 expressed protein -
6 Sobic.004G040800 ZOS2-03 - C2H2 zinc finger protein, expressed -
7 Sobic.001G152600 RIO1 family protein, expressed -
8 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
9 Sobic.006G181500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
10 Sobic.009G208200 WD repeat-containing protein 55, putative, expressed -
11 Sobic.001G163300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger protein-related, putative, expressed K11968: ariadne-1
12 Sobic.003G270100 dehydrin family protein, expressed -
13 Sobic.004G340100 PB1 domain containing protein, expressed -
14 Sobic.002G014200 OsFBX209 - F-box domain containing protein, expressed -
15 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
16 Sobic.001G534400 - -
17 Sobic.001G455250 - -
18 Sobic.009G156200 starch binding domain containing protein, putative, expressed -
19 Sobic.004G032600 - -
20 Sobic.002G257900 Highest expression level in primordial inflorescence(PubMedID : 27501690)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659857)@OsSPL18 - SBP-box gene family member, expressed -


Gene co-expression network
sample Sobic006G017600 Sobic006G017600 Sobic008G010900 Sobic008G010900 Sobic006G017600--Sobic008G010900 Sobic006G223800 Sobic006G223800 Sobic006G017600--Sobic006G223800 Sobic005G202000 Sobic005G202000 Sobic006G017600--Sobic005G202000 Sobic004G101500 Sobic004G101500 Sobic006G017600--Sobic004G101500 Sobic010G090700 Sobic010G090700 Sobic006G017600--Sobic010G090700 Sobic004G040800 Sobic004G040800 Sobic006G017600--Sobic004G040800 Sobic001G152600 Sobic001G152600 Sobic006G017600--Sobic001G152600 Sobic008G098700 Sobic008G098700 Sobic006G017600--Sobic008G098700 Sobic006G181500 Sobic006G181500 Sobic006G017600--Sobic006G181500 Sobic008G010900--Sobic006G223800 Sobic008G010900--Sobic006G017600 Sobic001G112000 Sobic001G112000 Sobic008G010900--Sobic001G112000 Sobic006G199700 Sobic006G199700 Sobic008G010900--Sobic006G199700 Sobic008G010900--Sobic004G101500 Sobic002G342100 Sobic002G342100 Sobic008G010900--Sobic002G342100 Sobic003G409800 Sobic003G409800 Sobic008G010900--Sobic003G409800 Sobic005G110421 Sobic005G110421 Sobic008G010900--Sobic005G110421 Sobic008G010900--Sobic010G090700 Sobic006G223800--Sobic008G010900 Sobic006G223800--Sobic006G017600 Sobic002G014200 Sobic002G014200 Sobic006G223800--Sobic002G014200 Sobic006G223800--Sobic005G110421 Sobic002G019500 Sobic002G019500 Sobic006G223800--Sobic002G019500 Sobic002G019750 Sobic002G019750 Sobic006G223800--Sobic002G019750 Sobic008G155600 Sobic008G155600 Sobic006G223800--Sobic008G155600 Sobic010G093400 Sobic010G093400 Sobic006G223800--Sobic010G093400 Sobic006G223800--Sobic001G112000 Sobic001G217300 Sobic001G217300 Sobic005G202000--Sobic001G217300 Sobic005G202000--Sobic001G152600 Sobic005G172700 Sobic005G172700 Sobic005G202000--Sobic005G172700 Sobic004G149400 Sobic004G149400 Sobic005G202000--Sobic004G149400 Sobic001G137400 Sobic001G137400 Sobic005G202000--Sobic001G137400 Sobic003G022900 Sobic003G022900 Sobic005G202000--Sobic003G022900 Sobic005G202000--Sobic006G017600 Sobic007G127950 Sobic007G127950 Sobic005G202000--Sobic007G127950 Sobic003G049600 Sobic003G049600 Sobic005G202000--Sobic003G049600 Sobic003G346500 Sobic003G346500 Sobic004G101500--Sobic003G346500 Sobic003G270100 Sobic003G270100 Sobic004G101500--Sobic003G270100 Sobic006G222500 Sobic006G222500 Sobic004G101500--Sobic006G222500 Sobic008G013200 Sobic008G013200 Sobic004G101500--Sobic008G013200 Sobic003G033000 Sobic003G033000 Sobic004G101500--Sobic003G033000 Sobic007G148400 Sobic007G148400 Sobic004G101500--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic004G101500--Sobic003G255700 Sobic004G101500--Sobic008G010900 Sobic003G308300 Sobic003G308300 Sobic004G101500--Sobic003G308300 Sobic004G346750 Sobic004G346750 Sobic010G090700--Sobic004G346750 Sobic010G090700--Sobic008G098700 Sobic010G090700--Sobic006G181500 Sobic006G215800 Sobic006G215800 Sobic010G090700--Sobic006G215800 Sobic007G048900 Sobic007G048900 Sobic010G090700--Sobic007G048900 Sobic002G299200 Sobic002G299200 Sobic010G090700--Sobic002G299200 Sobic010G090700--Sobic003G270100 Sobic002G106200 Sobic002G106200 Sobic010G090700--Sobic002G106200 Sobic003G044000 Sobic003G044000 Sobic010G090700--Sobic003G044000 Sobic010G222900 Sobic010G222900 Sobic004G040800--Sobic010G222900 Sobic003G435400 Sobic003G435400 Sobic004G040800--Sobic003G435400 Sobic004G234300 Sobic004G234300 Sobic004G040800--Sobic004G234300 Sobic003G369600 Sobic003G369600 Sobic004G040800--Sobic003G369600 Sobic001G496900 Sobic001G496900 Sobic004G040800--Sobic001G496900 Sobic004G040800--Sobic006G199700 Sobic004G040800--Sobic006G017600 Sobic010G252900 Sobic010G252900 Sobic004G040800--Sobic010G252900 Sobic006G096800 Sobic006G096800 Sobic004G040800--Sobic006G096800 Sobic008G161100 Sobic008G161100 Sobic001G152600--Sobic008G161100 Sobic001G163300 Sobic001G163300 Sobic001G152600--Sobic001G163300 Sobic001G152600--Sobic001G137400 Sobic001G152600--Sobic005G202000 Sobic003G191600 Sobic003G191600 Sobic001G152600--Sobic003G191600 Sobic003G207000 Sobic003G207000 Sobic001G152600--Sobic003G207000 Sobic001G152600--Sobic001G217300 Sobic005G166100 Sobic005G166100 Sobic001G152600--Sobic005G166100 Sobic001G152600--Sobic008G098700 Sobic008G098700--Sobic006G215800 Sobic008G098700--Sobic002G299200 Sobic003G090000 Sobic003G090000 Sobic008G098700--Sobic003G090000 Sobic009G152120 Sobic009G152120 Sobic008G098700--Sobic009G152120 Sobic003G027000 Sobic003G027000 Sobic008G098700--Sobic003G027000 Sobic001G500500 Sobic001G500500 Sobic008G098700--Sobic001G500500 Sobic008G098700--Sobic010G090700 Sobic008G098700--Sobic002G106200 Sobic003G396500 Sobic003G396500 Sobic008G098700--Sobic003G396500 Sobic006G181500--Sobic002G106200 Sobic002G108100 Sobic002G108100 Sobic006G181500--Sobic002G108100 Sobic006G181500--Sobic006G215800 Sobic006G181500--Sobic003G270100 Sobic006G181500--Sobic010G090700 Sobic006G181500--Sobic008G098700 Sobic006G181500--Sobic007G048900 Sobic001G203800 Sobic001G203800 Sobic006G181500--Sobic001G203800 Sobic006G181500--Sobic001G500500
Octagon: transcription factors


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