Gene annotation
Transcriptome id Sobic.004G101500.5,Sobic.004G101500.2,Sobic.004G101500.4,Sobic.004G101500.3,Sobic.004G101500.6,Sobic.004G101500.1
Synonym Sb04g008310
Functional annotation DNA binding protein, putative, expressed
UniProt A0A194YNR2 , A0A194YNU3 , C5XYK4 , A0A194YNR6
Pfam PF14634
Panther DB PTHR23041 PTHR23041:SF65
NCBI CDD -
KEGG Orthology K10639; CCNB1IP1, E3 ubiquitin-protein ligase CCNP1IP1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G53490 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g13810.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a034874 , Zm00025a020091 , Zm00025a035792 , Zm00025a032936 , Zm00025a043009
Brachypodium -
Barley HORVU6Hr1G040680.10 , HORVU6Hr1G040680.11 , HORVU6Hr1G040680.12 , HORVU6Hr1G040680.6 , HORVU6Hr1G040680.7 , HORVU6Hr1G040680.4 , HORVU6Hr1G040680.5 , HORVU6Hr1G040680.2 , HORVU6Hr1G040680.3 , HORVU6Hr1G040680.1 , HORVU6Hr1G040680.8 , HORVU6Hr1G040680.9
Wheat TraesCS6D02G182400 , TraesCS6D02G182400 , TraesCS6D02G182400 , TraesCS6B02G220900 , TraesCS6B02G220900 , TraesCS6B02G220900 , TraesCSU02G080300 , TraesCSU02G080300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G346500 similar to Nuclear transcription factor Y subunit B-3(PubMedID : 29862293)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
2 Sobic.003G270100 dehydrin family protein, expressed -
3 Sobic.006G222500 expressed protein -
4 Sobic.008G013200 expressed protein -
5 Sobic.003G033000 DIRP family protein, putative, expressed -
6 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
7 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
8 Sobic.008G010900 DNA repair protein Rad51, putative, expressed K10872: meiotic recombination protein DMC1
9 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
10 Sobic.004G186300 protein phosphotase protein, putative, expressed -
11 Sobic.001G050500 galactosyltransferase family protein, putative, expressed -
12 Sobic.002G419000 AGC_AGC_other_RS6K_like.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
13 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
14 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
15 Sobic.006G100266 - -
16 Sobic.004G032600 - -
17 Sobic.001G203800 expressed protein -
18 Sobic.001G427900 ASC1, putative, expressed -
19 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
20 Sobic.004G353500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase


Gene co-expression network
sample Sobic004G101500 Sobic004G101500 Sobic003G346500 Sobic003G346500 Sobic004G101500--Sobic003G346500 Sobic003G270100 Sobic003G270100 Sobic004G101500--Sobic003G270100 Sobic006G222500 Sobic006G222500 Sobic004G101500--Sobic006G222500 Sobic008G013200 Sobic008G013200 Sobic004G101500--Sobic008G013200 Sobic003G033000 Sobic003G033000 Sobic004G101500--Sobic003G033000 Sobic007G148400 Sobic007G148400 Sobic004G101500--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic004G101500--Sobic003G255700 Sobic008G010900 Sobic008G010900 Sobic004G101500--Sobic008G010900 Sobic003G308300 Sobic003G308300 Sobic004G101500--Sobic003G308300 Sobic003G346500--Sobic004G101500 Sobic004G186300 Sobic004G186300 Sobic003G346500--Sobic004G186300 Sobic010G253400 Sobic010G253400 Sobic003G346500--Sobic010G253400 Sobic003G346500--Sobic006G222500 Sobic008G140400 Sobic008G140400 Sobic003G346500--Sobic008G140400 Sobic003G346500--Sobic007G148400 Sobic003G346500--Sobic003G270100 Sobic007G140600 Sobic007G140600 Sobic003G346500--Sobic007G140600 Sobic001G408400 Sobic001G408400 Sobic003G346500--Sobic001G408400 Sobic001G203800 Sobic001G203800 Sobic003G270100--Sobic001G203800 Sobic003G270100--Sobic003G308300 Sobic003G270100--Sobic003G255700 Sobic001G050500 Sobic001G050500 Sobic003G270100--Sobic001G050500 Sobic003G270100--Sobic004G186300 Sobic006G100266 Sobic006G100266 Sobic003G270100--Sobic006G100266 Sobic004G328100 Sobic004G328100 Sobic003G270100--Sobic004G328100 Sobic001G305900 Sobic001G305900 Sobic003G270100--Sobic001G305900 Sobic006G208200 Sobic006G208200 Sobic003G270100--Sobic006G208200 Sobic006G222500--Sobic007G148400 Sobic006G222500--Sobic004G186300 Sobic007G146600 Sobic007G146600 Sobic006G222500--Sobic007G146600 Sobic003G404100 Sobic003G404100 Sobic006G222500--Sobic003G404100 Sobic006G222500--Sobic003G270100 Sobic007G218600 Sobic007G218600 Sobic006G222500--Sobic007G218600 Sobic001G193100 Sobic001G193100 Sobic006G222500--Sobic001G193100 Sobic002G419000 Sobic002G419000 Sobic006G222500--Sobic002G419000 Sobic006G222500--Sobic003G308300 Sobic008G013200--Sobic003G308300 Sobic002G016000 Sobic002G016000 Sobic008G013200--Sobic002G016000 Sobic008G013200--Sobic003G255700 Sobic005G201200 Sobic005G201200 Sobic008G013200--Sobic005G201200 Sobic002G066700 Sobic002G066700 Sobic008G013200--Sobic002G066700 Sobic002G304500 Sobic002G304500 Sobic008G013200--Sobic002G304500 Sobic002G158300 Sobic002G158300 Sobic008G013200--Sobic002G158300 Sobic008G013200--Sobic004G328100 Sobic006G038700 Sobic006G038700 Sobic008G013200--Sobic006G038700 Sobic004G039300 Sobic004G039300 Sobic003G033000--Sobic004G039300 Sobic003G033000--Sobic008G140400 Sobic003G033000--Sobic004G101500 Sobic009G179600 Sobic009G179600 Sobic003G033000--Sobic009G179600 Sobic003G033000--Sobic003G346500 Sobic003G033000--Sobic002G419000 Sobic003G289900 Sobic003G289900 Sobic003G033000--Sobic003G289900 Sobic003G033000--Sobic006G222500 Sobic007G117800 Sobic007G117800 Sobic003G033000--Sobic007G117800 Sobic007G148400--Sobic007G218600 Sobic007G148400--Sobic003G308300 Sobic007G148400--Sobic006G222500 Sobic009G186700 Sobic009G186700 Sobic007G148400--Sobic009G186700 Sobic007G148400--Sobic001G050500 Sobic007G148400--Sobic007G146600 Sobic007G148400--Sobic003G255700 Sobic007G148400--Sobic001G305900 Sobic002G276800 Sobic002G276800 Sobic007G148400--Sobic002G276800 Sobic003G255700--Sobic006G100266 Sobic003G255700--Sobic003G308300 Sobic003G255700--Sobic009G186700 Sobic003G255700--Sobic002G066700 Sobic003G255700--Sobic001G305900 Sobic003G255700--Sobic008G013200 Sobic003G255700--Sobic002G016000 Sobic003G255700--Sobic001G050500 Sobic003G255700--Sobic005G201200 Sobic006G223800 Sobic006G223800 Sobic008G010900--Sobic006G223800 Sobic006G017600 Sobic006G017600 Sobic008G010900--Sobic006G017600 Sobic001G112000 Sobic001G112000 Sobic008G010900--Sobic001G112000 Sobic006G199700 Sobic006G199700 Sobic008G010900--Sobic006G199700 Sobic008G010900--Sobic004G101500 Sobic002G342100 Sobic002G342100 Sobic008G010900--Sobic002G342100 Sobic003G409800 Sobic003G409800 Sobic008G010900--Sobic003G409800 Sobic005G110421 Sobic005G110421 Sobic008G010900--Sobic005G110421 Sobic010G090700 Sobic010G090700 Sobic008G010900--Sobic010G090700 Sobic003G308300--Sobic003G255700 Sobic003G308300--Sobic008G013200 Sobic003G308300--Sobic009G186700 Sobic003G308300--Sobic007G148400 Sobic003G308300--Sobic007G218600 Sobic003G308300--Sobic001G305900 Sobic003G308300--Sobic004G328100 Sobic003G308300--Sobic006G100266 Sobic003G308300--Sobic003G270100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.