Gene annotation
Transcriptome id Sobic.004G353500.1,Sobic.004G353500.2
Synonym Sb04g038020
Functional annotation oxidoreductase, putative, expressed
UniProt C5XWM8
Pfam PF03171
Panther DB PTHR10869 PTHR10869:SF78
NCBI CDD -
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G20270 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os02g58070.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a032736 , Zm00025a022658
Brachypodium KQK01569 , KQK01570
Barley HORVU7Hr1G066280.1 , HORVU6Hr1G093570.12 , HORVU6Hr1G093570.10 , HORVU6Hr1G093570.11 , HORVU5Hr1G030790.1 , HORVU5Hr1G030790.2 , HORVU6Hr1G093570.8 , HORVU6Hr1G093570.9 , HORVU6Hr1G093570.4 , HORVU6Hr1G093570.5 , HORVU6Hr1G093570.6 , HORVU6Hr1G093570.7 , HORVU6Hr1G093570.1 , HORVU6Hr1G093570.2 , HORVU6Hr1G093570.3 , HORVU1Hr1G024290.1
Wheat TraesCS6A02G410600 , TraesCS6A02G410600 , TraesCS6B02G456400 , TraesCS6D02G393500
Populus PNT27381


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cDNA sequences
Sobic.004G353500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G294900 expressed protein -
2 Sobic.008G118300 expressed protein -
3 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
4 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
5 Sobic.004G160800 inositol hexaphosphate kinase, putative, expressed K00915: IPMK, inositol-polyphosphate multikinase
6 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
7 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G203800 expressed protein -
9 Sobic.002G186500 UPF0041 domain containing protein, putative, expressed -
10 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
11 Sobic.001G181500 expressed protein -
12 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
13 Sobic.003G270100 dehydrin family protein, expressed -
14 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
15 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
16 Sobic.006G208200 GHMP kinases ATP-binding protein, putative, expressed K18677: galacturonokinase
17 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
18 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
19 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
20 Sobic.005G185200 - -


Gene co-expression network
sample Sobic004G353500 Sobic004G353500 Sobic003G294900 Sobic003G294900 Sobic004G353500--Sobic003G294900 Sobic008G118300 Sobic008G118300 Sobic004G353500--Sobic008G118300 Sobic005G044300 Sobic005G044300 Sobic004G353500--Sobic005G044300 Sobic007G012900 Sobic007G012900 Sobic004G353500--Sobic007G012900 Sobic004G160800 Sobic004G160800 Sobic004G353500--Sobic004G160800 Sobic001G286100 Sobic001G286100 Sobic004G353500--Sobic001G286100 Sobic002G037600 Sobic002G037600 Sobic004G353500--Sobic002G037600 Sobic001G203800 Sobic001G203800 Sobic004G353500--Sobic001G203800 Sobic002G186500 Sobic002G186500 Sobic004G353500--Sobic002G186500 Sobic003G294900--Sobic002G037600 Sobic003G294900--Sobic004G353500 Sobic006G208200 Sobic006G208200 Sobic003G294900--Sobic006G208200 Sobic004G100100 Sobic004G100100 Sobic003G294900--Sobic004G100100 Sobic001G188000 Sobic001G188000 Sobic003G294900--Sobic001G188000 Sobic003G294900--Sobic001G203800 Sobic001G309200 Sobic001G309200 Sobic003G294900--Sobic001G309200 Sobic005G185200 Sobic005G185200 Sobic003G294900--Sobic005G185200 Sobic003G044700 Sobic003G044700 Sobic003G294900--Sobic003G044700 Sobic008G118300--Sobic001G286100 Sobic002G304400 Sobic002G304400 Sobic008G118300--Sobic002G304400 Sobic008G118300--Sobic004G353500 Sobic008G017700 Sobic008G017700 Sobic008G118300--Sobic008G017700 Sobic008G118300--Sobic004G160800 Sobic010G002800 Sobic010G002800 Sobic008G118300--Sobic010G002800 Sobic003G418400 Sobic003G418400 Sobic008G118300--Sobic003G418400 Sobic008G118300--Sobic002G037600 Sobic006G271000 Sobic006G271000 Sobic008G118300--Sobic006G271000 Sobic008G018300 Sobic008G018300 Sobic005G044300--Sobic008G018300 Sobic004G159000 Sobic004G159000 Sobic005G044300--Sobic004G159000 Sobic001G387200 Sobic001G387200 Sobic005G044300--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic005G044300--Sobic004G039400 Sobic002G420600 Sobic002G420600 Sobic005G044300--Sobic002G420600 Sobic005G044300--Sobic004G353500 Sobic003G335300 Sobic003G335300 Sobic005G044300--Sobic003G335300 Sobic003G016300 Sobic003G016300 Sobic005G044300--Sobic003G016300 Sobic001G038000 Sobic001G038000 Sobic005G044300--Sobic001G038000 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic003G276100 Sobic003G276100 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic004G160800--Sobic004G353500 Sobic004G160800--Sobic008G118300 Sobic004G160800--Sobic001G181500 Sobic009G204601 Sobic009G204601 Sobic004G160800--Sobic009G204601 Sobic004G160800--Sobic001G286100 Sobic001G206700 Sobic001G206700 Sobic004G160800--Sobic001G206700 Sobic001G336050 Sobic001G336050 Sobic004G160800--Sobic001G336050 Sobic009G117200 Sobic009G117200 Sobic004G160800--Sobic009G117200 Sobic003G289601 Sobic003G289601 Sobic004G160800--Sobic003G289601 Sobic004G069400 Sobic004G069400 Sobic001G286100--Sobic004G069400 Sobic001G286100--Sobic008G118300 Sobic001G286100--Sobic003G418400 Sobic007G201000 Sobic007G201000 Sobic001G286100--Sobic007G201000 Sobic010G250000 Sobic010G250000 Sobic001G286100--Sobic010G250000 Sobic001G135200 Sobic001G135200 Sobic001G286100--Sobic001G135200 Sobic001G286100--Sobic006G271000 Sobic009G063800 Sobic009G063800 Sobic001G286100--Sobic009G063800 Sobic001G286100--Sobic001G309200 Sobic001G196800 Sobic001G196800 Sobic002G037600--Sobic001G196800 Sobic002G037600--Sobic003G294900 Sobic002G037600--Sobic001G203800 Sobic002G037600--Sobic006G208200 Sobic004G328100 Sobic004G328100 Sobic002G037600--Sobic004G328100 Sobic006G272300 Sobic006G272300 Sobic002G037600--Sobic006G272300 Sobic002G037600--Sobic001G309200 Sobic002G037600--Sobic005G185200 Sobic003G270100 Sobic003G270100 Sobic002G037600--Sobic003G270100 Sobic001G203800--Sobic003G270100 Sobic001G203800--Sobic004G328100 Sobic001G203800--Sobic006G208200 Sobic001G203800--Sobic002G037600 Sobic005G048600 Sobic005G048600 Sobic001G203800--Sobic005G048600 Sobic001G080800 Sobic001G080800 Sobic001G203800--Sobic001G080800 Sobic004G215200 Sobic004G215200 Sobic001G203800--Sobic004G215200 Sobic003G308300 Sobic003G308300 Sobic001G203800--Sobic003G308300 Sobic001G073700 Sobic001G073700 Sobic001G203800--Sobic001G073700 Sobic002G186500--Sobic007G012900 Sobic002G186500--Sobic001G387200 Sobic002G186500--Sobic008G018300 Sobic002G255400 Sobic002G255400 Sobic002G186500--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G186500--Sobic004G173700 Sobic010G231700 Sobic010G231700 Sobic002G186500--Sobic010G231700 Sobic002G186500--Sobic004G100100 Sobic002G186500--Sobic006G041800 Sobic007G119600 Sobic007G119600 Sobic002G186500--Sobic007G119600
Octagon: transcription factors


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