Gene annotation
Transcriptome id Sobic.003G033000.2,Sobic.003G033000.1
Synonym ALY3, ATALY3, Sb03g003005
Functional annotation DIRP family protein, putative, expressed
UniProt A0A1B6Q131 , A0A1B6Q185
Pfam PF00249 PF06584
Panther DB PTHR21689 PTHR21689:SF4
NCBI CDD KOG1019; Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly
KEGG Orthology -
Gene Ontology GO:0017053; transcription repressor complex GO:0007049cell cycle GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G21430 : DNA binding
RAP-DB (Rice) LOC_Os01g09760.1 : DIRP family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035794 , Zm00025a023023
Brachypodium KQK03145 , KQK03146
Barley -
Wheat TraesCS3D02G108000 , TraesCS3B02G124300 , TraesCS3B02G124300 , TraesCS3B02G124300 , TraesCS3B02G124300 , TraesCS3D02G108000 , TraesCS3D02G108000 , TraesCS3A02G105800 , TraesCS3A02G105800 , TraesCS3A02G105800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase
2 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
3 Sobic.004G101500 DNA binding protein, putative, expressed K10639: CCNB1IP1, E3 ubiquitin-protein ligase CCNP1IP1
4 Sobic.009G179600 expressed protein -
5 Sobic.003G346500 similar to Nuclear transcription factor Y subunit B-3(PubMedID : 29862293)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
6 Sobic.002G419000 AGC_AGC_other_RS6K_like.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
7 Sobic.003G289900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ENTH domain containing protein, expressed K12471: epsin
8 Sobic.006G222500 expressed protein -
9 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
10 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
11 Sobic.002G431000 transporter, putative, expressed -
12 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
13 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.002G313900 potassium transporter, putative, expressed -
15 Sobic.001G457700 expressed protein -
16 Sobic.003G121600 gb protein, putative, expressed -
17 Sobic.002G357900 expressed protein -
18 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
19 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
20 Sobic.008G021000 exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G033000 Sobic003G033000 Sobic004G039300 Sobic004G039300 Sobic003G033000--Sobic004G039300 Sobic008G140400 Sobic008G140400 Sobic003G033000--Sobic008G140400 Sobic004G101500 Sobic004G101500 Sobic003G033000--Sobic004G101500 Sobic009G179600 Sobic009G179600 Sobic003G033000--Sobic009G179600 Sobic003G346500 Sobic003G346500 Sobic003G033000--Sobic003G346500 Sobic002G419000 Sobic002G419000 Sobic003G033000--Sobic002G419000 Sobic003G289900 Sobic003G289900 Sobic003G033000--Sobic003G289900 Sobic006G222500 Sobic006G222500 Sobic003G033000--Sobic006G222500 Sobic007G117800 Sobic007G117800 Sobic003G033000--Sobic007G117800 Sobic001G085900 Sobic001G085900 Sobic004G039300--Sobic001G085900 Sobic001G313500 Sobic001G313500 Sobic004G039300--Sobic001G313500 Sobic004G039300--Sobic007G117800 Sobic010G026700 Sobic010G026700 Sobic004G039300--Sobic010G026700 Sobic004G039300--Sobic003G033000 Sobic003G121600 Sobic003G121600 Sobic004G039300--Sobic003G121600 Sobic001G122500 Sobic001G122500 Sobic004G039300--Sobic001G122500 Sobic001G311100 Sobic001G311100 Sobic004G039300--Sobic001G311100 Sobic002G261900 Sobic002G261900 Sobic004G039300--Sobic002G261900 Sobic001G005600 Sobic001G005600 Sobic008G140400--Sobic001G005600 Sobic007G173700 Sobic007G173700 Sobic008G140400--Sobic007G173700 Sobic008G140400--Sobic006G222500 Sobic001G122000 Sobic001G122000 Sobic008G140400--Sobic001G122000 Sobic001G023100 Sobic001G023100 Sobic008G140400--Sobic001G023100 Sobic008G140400--Sobic002G419000 Sobic002G357900 Sobic002G357900 Sobic008G140400--Sobic002G357900 Sobic001G193100 Sobic001G193100 Sobic008G140400--Sobic001G193100 Sobic003G199500 Sobic003G199500 Sobic008G140400--Sobic003G199500 Sobic004G101500--Sobic003G346500 Sobic003G270100 Sobic003G270100 Sobic004G101500--Sobic003G270100 Sobic004G101500--Sobic006G222500 Sobic008G013200 Sobic008G013200 Sobic004G101500--Sobic008G013200 Sobic004G101500--Sobic003G033000 Sobic007G148400 Sobic007G148400 Sobic004G101500--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic004G101500--Sobic003G255700 Sobic008G010900 Sobic008G010900 Sobic004G101500--Sobic008G010900 Sobic003G308300 Sobic003G308300 Sobic004G101500--Sobic003G308300 Sobic007G216500 Sobic007G216500 Sobic009G179600--Sobic007G216500 Sobic006G263100 Sobic006G263100 Sobic009G179600--Sobic006G263100 Sobic009G179600--Sobic003G033000 Sobic009G179600--Sobic004G039300 Sobic006G217300 Sobic006G217300 Sobic009G179600--Sobic006G217300 Sobic009G179600--Sobic001G122500 Sobic004G353600 Sobic004G353600 Sobic009G179600--Sobic004G353600 Sobic004G031600 Sobic004G031600 Sobic009G179600--Sobic004G031600 Sobic002G395600 Sobic002G395600 Sobic009G179600--Sobic002G395600 Sobic003G346500--Sobic004G101500 Sobic004G186300 Sobic004G186300 Sobic003G346500--Sobic004G186300 Sobic010G253400 Sobic010G253400 Sobic003G346500--Sobic010G253400 Sobic003G346500--Sobic006G222500 Sobic003G346500--Sobic008G140400 Sobic003G346500--Sobic007G148400 Sobic003G346500--Sobic003G270100 Sobic007G140600 Sobic007G140600 Sobic003G346500--Sobic007G140600 Sobic001G408400 Sobic001G408400 Sobic003G346500--Sobic001G408400 Sobic002G419000--Sobic006G222500 Sobic002G313900 Sobic002G313900 Sobic002G419000--Sobic002G313900 Sobic002G419000--Sobic008G140400 Sobic002G419000--Sobic004G039300 Sobic002G419000--Sobic001G005600 Sobic009G160600 Sobic009G160600 Sobic002G419000--Sobic009G160600 Sobic008G021000 Sobic008G021000 Sobic002G419000--Sobic008G021000 Sobic002G419000--Sobic007G148400 Sobic002G419000--Sobic001G122000 Sobic002G225300 Sobic002G225300 Sobic003G289900--Sobic002G225300 Sobic009G153000 Sobic009G153000 Sobic003G289900--Sobic009G153000 Sobic003G289900--Sobic003G033000 Sobic003G289900--Sobic004G353600 Sobic003G289900--Sobic009G179600 Sobic003G332000 Sobic003G332000 Sobic003G289900--Sobic003G332000 Sobic009G118600 Sobic009G118600 Sobic003G289900--Sobic009G118600 Sobic003G197300 Sobic003G197300 Sobic003G289900--Sobic003G197300 Sobic003G289900--Sobic004G039300 Sobic006G222500--Sobic007G148400 Sobic006G222500--Sobic004G186300 Sobic007G146600 Sobic007G146600 Sobic006G222500--Sobic007G146600 Sobic003G404100 Sobic003G404100 Sobic006G222500--Sobic003G404100 Sobic006G222500--Sobic003G270100 Sobic007G218600 Sobic007G218600 Sobic006G222500--Sobic007G218600 Sobic006G222500--Sobic001G193100 Sobic006G222500--Sobic002G419000 Sobic006G222500--Sobic003G308300 Sobic003G148900 Sobic003G148900 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic002G401700 Sobic002G401700 Sobic007G117800--Sobic002G401700 Sobic003G276100 Sobic003G276100 Sobic007G117800--Sobic003G276100 Sobic007G012900 Sobic007G012900 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic002G262200 Sobic002G262200 Sobic007G117800--Sobic002G262200
Octagon: transcription factors


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