Gene annotation
Transcriptome id Sobic.008G010900.1
Synonym ATDMC1, ARLIM15, Sb08g001020, DMC1
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt A0A1Z5R4C2
Pfam PF00154
Panther DB PTHR22942 PTHR22942:SF30
NCBI CDD KOG1434; Meiotic recombination protein Dmc1
KEGG Orthology K10872; meiotic recombination protein DMC1
Gene Ontology GO:0009432; SOS response GO:0006281DNA repair GO:0005524ATP binding GO:0003697single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT3G22880 : DNA repair (Rad51) family protein
RAP-DB (Rice) LOC_Os11g04954.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a028946 , Zm00025a041041
Brachypodium PNT65469 , KQJ92333
Barley HORVU5Hr1G040730.1 , HORVU5Hr1G040730.3 , HORVU5Hr1G040730.4 , HORVU5Hr1G040730.2
Wheat TraesCS5A02G133000 , TraesCS5D02G141200 , TraesCS5B02G131900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G223800 ZOS8-01 - C2H2 zinc finger protein, expressed -
2 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
3 Sobic.001G112000 3,4-dihydroxy-2-butanone kinase, putative, expressed K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)
4 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
5 Sobic.004G101500 DNA binding protein, putative, expressed K10639: CCNB1IP1, E3 ubiquitin-protein ligase CCNP1IP1
6 Sobic.002G342100 no apical meristem protein, putative, expressed -
7 Sobic.003G409800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
8 Sobic.005G110421 - -
9 Sobic.010G090700 expressed protein -
10 Sobic.001G163300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger protein-related, putative, expressed K11968: ariadne-1
11 Sobic.002G014200 OsFBX209 - F-box domain containing protein, expressed -
12 Sobic.003G144200 Homeobox domain containing protein, expressed -
13 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
14 Sobic.005G096700 - -
15 Sobic.004G032600 - -
16 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
17 Sobic.009G179600 expressed protein -
18 Sobic.001G215100 - -
19 Sobic.006G069200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
20 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi


Gene co-expression network
sample Sobic008G010900 Sobic008G010900 Sobic006G223800 Sobic006G223800 Sobic008G010900--Sobic006G223800 Sobic006G017600 Sobic006G017600 Sobic008G010900--Sobic006G017600 Sobic001G112000 Sobic001G112000 Sobic008G010900--Sobic001G112000 Sobic006G199700 Sobic006G199700 Sobic008G010900--Sobic006G199700 Sobic004G101500 Sobic004G101500 Sobic008G010900--Sobic004G101500 Sobic002G342100 Sobic002G342100 Sobic008G010900--Sobic002G342100 Sobic003G409800 Sobic003G409800 Sobic008G010900--Sobic003G409800 Sobic005G110421 Sobic005G110421 Sobic008G010900--Sobic005G110421 Sobic010G090700 Sobic010G090700 Sobic008G010900--Sobic010G090700 Sobic006G223800--Sobic008G010900 Sobic006G223800--Sobic006G017600 Sobic002G014200 Sobic002G014200 Sobic006G223800--Sobic002G014200 Sobic006G223800--Sobic005G110421 Sobic002G019500 Sobic002G019500 Sobic006G223800--Sobic002G019500 Sobic002G019750 Sobic002G019750 Sobic006G223800--Sobic002G019750 Sobic008G155600 Sobic008G155600 Sobic006G223800--Sobic008G155600 Sobic010G093400 Sobic010G093400 Sobic006G223800--Sobic010G093400 Sobic006G223800--Sobic001G112000 Sobic006G017600--Sobic008G010900 Sobic006G017600--Sobic006G223800 Sobic005G202000 Sobic005G202000 Sobic006G017600--Sobic005G202000 Sobic006G017600--Sobic004G101500 Sobic006G017600--Sobic010G090700 Sobic004G040800 Sobic004G040800 Sobic006G017600--Sobic004G040800 Sobic001G152600 Sobic001G152600 Sobic006G017600--Sobic001G152600 Sobic008G098700 Sobic008G098700 Sobic006G017600--Sobic008G098700 Sobic006G181500 Sobic006G181500 Sobic006G017600--Sobic006G181500 Sobic001G112000--Sobic002G342100 Sobic009G128300 Sobic009G128300 Sobic001G112000--Sobic009G128300 Sobic008G031300 Sobic008G031300 Sobic001G112000--Sobic008G031300 Sobic003G227600 Sobic003G227600 Sobic001G112000--Sobic003G227600 Sobic004G211301 Sobic004G211301 Sobic001G112000--Sobic004G211301 Sobic001G509400 Sobic001G509400 Sobic001G112000--Sobic001G509400 Sobic002G331450 Sobic002G331450 Sobic001G112000--Sobic002G331450 Sobic002G182800 Sobic002G182800 Sobic001G112000--Sobic002G182800 Sobic005G096700 Sobic005G096700 Sobic001G112000--Sobic005G096700 Sobic003G435400 Sobic003G435400 Sobic006G199700--Sobic003G435400 Sobic002G373600 Sobic002G373600 Sobic006G199700--Sobic002G373600 Sobic003G385000 Sobic003G385000 Sobic006G199700--Sobic003G385000 Sobic001G284425 Sobic001G284425 Sobic006G199700--Sobic001G284425 Sobic006G069200 Sobic006G069200 Sobic006G199700--Sobic006G069200 Sobic003G223800 Sobic003G223800 Sobic006G199700--Sobic003G223800 Sobic006G199700--Sobic008G010900 Sobic004G098800 Sobic004G098800 Sobic006G199700--Sobic004G098800 Sobic006G199700--Sobic002G019750 Sobic003G346500 Sobic003G346500 Sobic004G101500--Sobic003G346500 Sobic003G270100 Sobic003G270100 Sobic004G101500--Sobic003G270100 Sobic006G222500 Sobic006G222500 Sobic004G101500--Sobic006G222500 Sobic008G013200 Sobic008G013200 Sobic004G101500--Sobic008G013200 Sobic003G033000 Sobic003G033000 Sobic004G101500--Sobic003G033000 Sobic007G148400 Sobic007G148400 Sobic004G101500--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic004G101500--Sobic003G255700 Sobic004G101500--Sobic008G010900 Sobic003G308300 Sobic003G308300 Sobic004G101500--Sobic003G308300 Sobic002G342100--Sobic009G128300 Sobic001G075101 Sobic001G075101 Sobic002G342100--Sobic001G075101 Sobic002G342100--Sobic002G182800 Sobic002G342100--Sobic003G227600 Sobic002G342100--Sobic002G331450 Sobic007G169600 Sobic007G169600 Sobic002G342100--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic002G342100--Sobic003G083000 Sobic007G153001 Sobic007G153001 Sobic002G342100--Sobic007G153001 Sobic002G037400 Sobic002G037400 Sobic002G342100--Sobic002G037400 Sobic007G216500 Sobic007G216500 Sobic003G409800--Sobic007G216500 Sobic003G409800--Sobic008G010900 Sobic003G197300 Sobic003G197300 Sobic003G409800--Sobic003G197300 Sobic003G431000 Sobic003G431000 Sobic003G409800--Sobic003G431000 Sobic009G179600 Sobic009G179600 Sobic003G409800--Sobic009G179600 Sobic002G395600 Sobic002G395600 Sobic003G409800--Sobic002G395600 Sobic001G510400 Sobic001G510400 Sobic003G409800--Sobic001G510400 Sobic004G250900 Sobic004G250900 Sobic003G409800--Sobic004G250900 Sobic003G289900 Sobic003G289900 Sobic003G409800--Sobic003G289900 Sobic003G281600 Sobic003G281600 Sobic005G110421--Sobic003G281600 Sobic005G110421--Sobic006G223800 Sobic005G110421--Sobic003G197300 Sobic005G110421--Sobic001G510400 Sobic003G358200 Sobic003G358200 Sobic005G110421--Sobic003G358200 Sobic005G110421--Sobic001G112000 Sobic005G110421--Sobic008G010900 Sobic002G185300 Sobic002G185300 Sobic005G110421--Sobic002G185300 Sobic005G110421--Sobic010G093400 Sobic004G346750 Sobic004G346750 Sobic010G090700--Sobic004G346750 Sobic010G090700--Sobic008G098700 Sobic010G090700--Sobic006G181500 Sobic006G215800 Sobic006G215800 Sobic010G090700--Sobic006G215800 Sobic007G048900 Sobic007G048900 Sobic010G090700--Sobic007G048900 Sobic002G299200 Sobic002G299200 Sobic010G090700--Sobic002G299200 Sobic010G090700--Sobic003G270100 Sobic002G106200 Sobic002G106200 Sobic010G090700--Sobic002G106200 Sobic003G044000 Sobic003G044000 Sobic010G090700--Sobic003G044000
Octagon: transcription factors


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