Gene annotation
Transcriptome id Sobic.006G069200.1,Sobic.006G069200.3,Sobic.006G069200.2
Synonym Sb06g015590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyl hydrolases family 17, putative, expressed
UniProt A0A1Z5RDJ1 , C5YFV2
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G27500 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os04g33640.1,LOC_Os04g33640.2 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a011515 , Zm00025a031488 , Zm00025a001555 , Zm00025a045468 , Zm00025a039585
Brachypodium KQJ82509 , KQJ99728
Barley HORVU2Hr1G072890.8 , HORVU2Hr1G072890.9 , HORVU2Hr1G072890.2 , HORVU2Hr1G072890.3 , HORVU2Hr1G072890.1 , HORVU2Hr1G072890.6 , HORVU2Hr1G072890.7 , HORVU2Hr1G072890.4 , HORVU2Hr1G072890.5 , HORVU3Hr1G067280.8 , HORVU3Hr1G067280.9 , HORVU3Hr1G067280.1 , HORVU3Hr1G067280.3 , HORVU3Hr1G067280.4 , HORVU3Hr1G067280.5 , HORVU3Hr1G067280.6 , HORVU3Hr1G067280.7 , HORVU3Hr1G067280.10 , HORVU3Hr1G067280.11 , HORVU3Hr1G067280.2 , HORVU2Hr1G072890.10 , HORVU2Hr1G072890.11 , HORVU3Hr1G084170.1 , HORVU3Hr1G084170.3 , HORVU3Hr1G084170.2 , HORVU3Hr1G084170.5 , HORVU3Hr1G084170.4
Wheat TraesCS4B02G020100 , TraesCS3D02G249500 , TraesCS3D02G249500 , TraesCS3B02G278400 , TraesCS2B02G311200 , TraesCS2B02G311200 , TraesCS2A02G294700 , TraesCS2A02G294700 , TraesCS2D02G292500 , TraesCS2D02G292500 , TraesCS3A02G249500
Populus -


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cDNA sequences
Sobic.006G069200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G342100 no apical meristem protein, putative, expressed -
2 Sobic.001G075101 - -
3 Sobic.007G153001 - -
4 Sobic.009G128300 CUE domain containing protein, expressed -
5 Sobic.002G182800 expressed protein -
6 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
7 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
8 Sobic.003G233900 - -
9 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
11 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
12 Sobic.003G040800 WRKY102, expressed -
13 Sobic.004G283300 AP2 domain containing protein, expressed -
14 Sobic.001G469600 "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed -
15 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
16 Sobic.002G331450 - -
17 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
18 Sobic.001G509400 - -
19 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
20 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase


Gene co-expression network
sample Sobic006G069200 Sobic006G069200 Sobic002G342100 Sobic002G342100 Sobic006G069200--Sobic002G342100 Sobic001G075101 Sobic001G075101 Sobic006G069200--Sobic001G075101 Sobic007G153001 Sobic007G153001 Sobic006G069200--Sobic007G153001 Sobic009G128300 Sobic009G128300 Sobic006G069200--Sobic009G128300 Sobic002G182800 Sobic002G182800 Sobic006G069200--Sobic002G182800 Sobic010G016500 Sobic010G016500 Sobic006G069200--Sobic010G016500 Sobic003G227600 Sobic003G227600 Sobic006G069200--Sobic003G227600 Sobic003G233900 Sobic003G233900 Sobic006G069200--Sobic003G233900 Sobic009G216900 Sobic009G216900 Sobic006G069200--Sobic009G216900 Sobic002G342100--Sobic009G128300 Sobic002G342100--Sobic001G075101 Sobic002G342100--Sobic002G182800 Sobic002G342100--Sobic003G227600 Sobic002G331450 Sobic002G331450 Sobic002G342100--Sobic002G331450 Sobic007G169600 Sobic007G169600 Sobic002G342100--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic002G342100--Sobic003G083000 Sobic002G342100--Sobic007G153001 Sobic002G037400 Sobic002G037400 Sobic002G342100--Sobic002G037400 Sobic001G075101--Sobic007G169600 Sobic006G203000 Sobic006G203000 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic001G075101--Sobic007G153001 Sobic002G325600 Sobic002G325600 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic001G075101--Sobic002G182800 Sobic007G153001--Sobic001G075101 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic002G023900 Sobic002G023900 Sobic007G153001--Sobic002G023900 Sobic007G153001--Sobic002G342100 Sobic007G153001--Sobic002G331450 Sobic007G153001--Sobic002G037400 Sobic007G153001--Sobic006G203000 Sobic007G153001--Sobic002G325600 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic002G182800--Sobic009G128300 Sobic002G182800--Sobic001G509400 Sobic002G182800--Sobic003G233900 Sobic002G182800--Sobic001G075101 Sobic002G182800--Sobic002G331450 Sobic002G182800--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic002G182800--Sobic003G040800 Sobic010G085400 Sobic010G085400 Sobic002G182800--Sobic010G085400 Sobic002G182800--Sobic002G342100 Sobic004G281200 Sobic004G281200 Sobic010G016500--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic010G016500--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic010G016500--Sobic006G194600 Sobic010G016500--Sobic006G203000 Sobic004G283300 Sobic004G283300 Sobic010G016500--Sobic004G283300 Sobic002G217100 Sobic002G217100 Sobic010G016500--Sobic002G217100 Sobic004G244100 Sobic004G244100 Sobic010G016500--Sobic004G244100 Sobic001G081600 Sobic001G081600 Sobic010G016500--Sobic001G081600 Sobic010G016500--Sobic002G182800 Sobic003G227600--Sobic009G128300 Sobic003G227600--Sobic009G216900 Sobic003G227600--Sobic003G233900 Sobic003G227600--Sobic002G182800 Sobic003G227600--Sobic003G040800 Sobic003G227600--Sobic002G342100 Sobic003G227600--Sobic001G509400 Sobic003G227600--Sobic001G075101 Sobic003G227600--Sobic002G331450 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic009G000700 Sobic009G000700 Sobic003G233900--Sobic009G000700 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic004G285100 Sobic004G285100 Sobic003G233900--Sobic004G285100 Sobic009G216900--Sobic003G227600 Sobic009G216900--Sobic003G233900 Sobic009G216900--Sobic009G128300 Sobic009G216900--Sobic003G040800 Sobic009G216900--Sobic002G182800 Sobic009G216900--Sobic002G342100 Sobic009G216900--Sobic001G509400 Sobic009G216900--Sobic004G285100 Sobic009G216900--Sobic003G079800
Octagon: transcription factors


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