Gene annotation
Transcriptome id Sobic.001G427900.1
Synonym LAG1HOMOLOG2, Sb01g040200, LOH2
Functional annotation ASC1, putative, expressed
UniProt C5WQ59
Pfam PF03798
Panther DB PTHR12560 PTHR12560:SF12
NCBI CDD KOG1607; Protein transporter of the TRAM (translocating chain-associating membrane) superfamily
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT3G19260 : LAG1 homologue 2
RAP-DB (Rice) LOC_Os03g15750.1 : ASC1, putative, expressed
MaizeGDB (Corn) Zm00025a001711 , Zm00025a052801
Brachypodium KQK22444
Barley HORVU4Hr1G061140.5 , HORVU4Hr1G061140.2 , HORVU4Hr1G061140.3 , HORVU4Hr1G061140.1 , HORVU4Hr1G061140.4 , HORVU4Hr1G061150.1 , HORVU4Hr1G061150.3 , HORVU4Hr1G061150.2 , HORVU4Hr1G061150.5 , HORVU4Hr1G061150.4 , HORVU4Hr1G061150.6
Wheat TraesCS4B02G214800 , TraesCS4B02G214800 , TraesCS4D02G215400 , TraesCS4A02G089500 , TraesCS4A02G089500
Populus -


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cDNA sequences
Sobic.001G427900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G171900 expressed protein -
2 Sobic.008G013200 expressed protein -
3 Sobic.010G051800 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.001G025700 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
5 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
6 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
7 Sobic.004G340566 - -
8 Sobic.002G014032 - -
9 Sobic.001G449000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@haemolysin-III, putative, expressed K07297: adiponectin receptor
10 Sobic.003G270100 dehydrin family protein, expressed -
11 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
12 Sobic.006G100266 - -
13 Sobic.002G158300 ankyrin, putative, expressed -
14 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
15 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
16 Sobic.004G027200 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
17 Sobic.003G347400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@gp176, putative, expressed -
18 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
19 Sobic.002G060400 OsFBX237 - F-box domain containing protein, expressed -
20 Sobic.001G455250 - -


Gene co-expression network
sample Sobic001G427900 Sobic001G427900 Sobic005G171900 Sobic005G171900 Sobic001G427900--Sobic005G171900 Sobic008G013200 Sobic008G013200 Sobic001G427900--Sobic008G013200 Sobic010G051800 Sobic010G051800 Sobic001G427900--Sobic010G051800 Sobic001G025700 Sobic001G025700 Sobic001G427900--Sobic001G025700 Sobic003G255700 Sobic003G255700 Sobic001G427900--Sobic003G255700 Sobic003G308300 Sobic003G308300 Sobic001G427900--Sobic003G308300 Sobic004G340566 Sobic004G340566 Sobic001G427900--Sobic004G340566 Sobic002G014032 Sobic002G014032 Sobic001G427900--Sobic002G014032 Sobic001G449000 Sobic001G449000 Sobic001G427900--Sobic001G449000 Sobic004G203000 Sobic004G203000 Sobic005G171900--Sobic004G203000 Sobic001G242200 Sobic001G242200 Sobic005G171900--Sobic001G242200 Sobic005G070301 Sobic005G070301 Sobic005G171900--Sobic005G070301 Sobic009G240500 Sobic009G240500 Sobic005G171900--Sobic009G240500 Sobic002G013550 Sobic002G013550 Sobic005G171900--Sobic002G013550 Sobic001G485000 Sobic001G485000 Sobic005G171900--Sobic001G485000 Sobic001G218600 Sobic001G218600 Sobic005G171900--Sobic001G218600 Sobic001G080800 Sobic001G080800 Sobic005G171900--Sobic001G080800 Sobic008G041300 Sobic008G041300 Sobic005G171900--Sobic008G041300 Sobic008G013200--Sobic003G308300 Sobic002G016000 Sobic002G016000 Sobic008G013200--Sobic002G016000 Sobic008G013200--Sobic003G255700 Sobic005G201200 Sobic005G201200 Sobic008G013200--Sobic005G201200 Sobic002G066700 Sobic002G066700 Sobic008G013200--Sobic002G066700 Sobic002G304500 Sobic002G304500 Sobic008G013200--Sobic002G304500 Sobic002G158300 Sobic002G158300 Sobic008G013200--Sobic002G158300 Sobic004G328100 Sobic004G328100 Sobic008G013200--Sobic004G328100 Sobic006G038700 Sobic006G038700 Sobic008G013200--Sobic006G038700 Sobic010G051800--Sobic008G041300 Sobic010G051800--Sobic002G016000 Sobic002G274700 Sobic002G274700 Sobic010G051800--Sobic002G274700 Sobic010G143633 Sobic010G143633 Sobic010G051800--Sobic010G143633 Sobic008G105600 Sobic008G105600 Sobic010G051800--Sobic008G105600 Sobic010G051800--Sobic003G255700 Sobic001G075201 Sobic001G075201 Sobic010G051800--Sobic001G075201 Sobic004G027200 Sobic004G027200 Sobic010G051800--Sobic004G027200 Sobic007G171700 Sobic007G171700 Sobic010G051800--Sobic007G171700 Sobic001G025700--Sobic003G308300 Sobic001G025700--Sobic008G013200 Sobic001G025700--Sobic003G255700 Sobic007G153500 Sobic007G153500 Sobic001G025700--Sobic007G153500 Sobic001G025700--Sobic004G328100 Sobic002G348400 Sobic002G348400 Sobic001G025700--Sobic002G348400 Sobic009G186700 Sobic009G186700 Sobic001G025700--Sobic009G186700 Sobic010G069500 Sobic010G069500 Sobic001G025700--Sobic010G069500 Sobic007G148400 Sobic007G148400 Sobic001G025700--Sobic007G148400 Sobic006G100266 Sobic006G100266 Sobic003G255700--Sobic006G100266 Sobic003G255700--Sobic003G308300 Sobic003G255700--Sobic009G186700 Sobic003G255700--Sobic002G066700 Sobic001G305900 Sobic001G305900 Sobic003G255700--Sobic001G305900 Sobic003G255700--Sobic008G013200 Sobic003G255700--Sobic002G016000 Sobic001G050500 Sobic001G050500 Sobic003G255700--Sobic001G050500 Sobic003G255700--Sobic005G201200 Sobic003G308300--Sobic003G255700 Sobic003G308300--Sobic008G013200 Sobic003G308300--Sobic009G186700 Sobic003G308300--Sobic007G148400 Sobic007G218600 Sobic007G218600 Sobic003G308300--Sobic007G218600 Sobic003G308300--Sobic001G305900 Sobic003G308300--Sobic004G328100 Sobic003G308300--Sobic006G100266 Sobic003G270100 Sobic003G270100 Sobic003G308300--Sobic003G270100 Sobic009G132400 Sobic009G132400 Sobic004G340566--Sobic009G132400 Sobic002G099866 Sobic002G099866 Sobic004G340566--Sobic002G099866 Sobic003G101200 Sobic003G101200 Sobic004G340566--Sobic003G101200 Sobic001G509100 Sobic001G509100 Sobic004G340566--Sobic001G509100 Sobic001G324800 Sobic001G324800 Sobic004G340566--Sobic001G324800 Sobic004G262100 Sobic004G262100 Sobic004G340566--Sobic004G262100 Sobic009G234500 Sobic009G234500 Sobic004G340566--Sobic009G234500 Sobic001G452100 Sobic001G452100 Sobic004G340566--Sobic001G452100 Sobic002G266600 Sobic002G266600 Sobic004G340566--Sobic002G266600 Sobic002G014032--Sobic001G075201 Sobic009G119100 Sobic009G119100 Sobic002G014032--Sobic009G119100 Sobic009G056900 Sobic009G056900 Sobic002G014032--Sobic009G056900 Sobic001G392700 Sobic001G392700 Sobic002G014032--Sobic001G392700 Sobic002G147400 Sobic002G147400 Sobic002G014032--Sobic002G147400 Sobic008G154600 Sobic008G154600 Sobic002G014032--Sobic008G154600 Sobic002G014032--Sobic002G016000 Sobic002G014032--Sobic008G041300 Sobic002G014032--Sobic005G201200 Sobic001G449000--Sobic001G080800 Sobic002G193500 Sobic002G193500 Sobic001G449000--Sobic002G193500 Sobic001G449000--Sobic004G328100 Sobic001G449000--Sobic001G485000 Sobic001G449000--Sobic010G051800 Sobic001G449000--Sobic007G218600 Sobic010G160300 Sobic010G160300 Sobic001G449000--Sobic010G160300 Sobic002G304700 Sobic002G304700 Sobic001G449000--Sobic002G304700 Sobic007G086600 Sobic007G086600 Sobic001G449000--Sobic007G086600
Octagon: transcription factors


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