Gene annotation
Transcriptome id Sobic.002G257900.1,Sobic.002G257900.2
Synonym SbSBP3;SbSBP3;SbSBP3, Sb02g029300
Functional annotation Highest expression level in primordial inflorescence (PubMedID : 27501690)
SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)" (PubMedID : 31659857)
OsSPL18 - SBP-box gene family member, expressed
UniProt A0A1W0W5U8 , C5X4Q4
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF19 PTHR31251 PTHR31251:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G50570 : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
RAP-DB (Rice) LOC_Os09g32944.1 : OsSPL18 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a034758 , Zm00025a042001 , Zm00025a019166 , Zm00025a039285 , Zm00025a047584 , Zm00025a026243 , Zm00025a014306 , Zm00025a030402 , Zm00025a030405 , Zm00025a051683
Brachypodium PNT66007 , KQJ88495 , KQJ90930 , KQJ99120
Barley HORVU5Hr1G076380.11 , HORVU5Hr1G076380.10 , HORVU3Hr1G094730.2 , HORVU3Hr1G094730.3 , HORVU3Hr1G094730.1 , HORVU3Hr1G094730.7 , HORVU3Hr1G094730.10 , HORVU3Hr1G094730.11 , HORVU3Hr1G094730.12 , HORVU5Hr1G076380.5 , HORVU5Hr1G076380.4 , HORVU5Hr1G076380.7 , HORVU5Hr1G076380.6 , HORVU5Hr1G076380.1 , HORVU5Hr1G076380.3 , HORVU5Hr1G076380.2 , HORVU5Hr1G076380.9 , HORVU5Hr1G076380.8 , HORVU0Hr1G039170.6 , HORVU0Hr1G039170.4 , HORVU0Hr1G039170.5 , HORVU0Hr1G039170.8 , HORVU0Hr1G039170.9 , HORVU6Hr1G030490.1 , HORVU6Hr1G030490.2 , HORVU6Hr1G030490.3 , HORVU6Hr1G030490.4
Wheat TraesCS3D02G425800 , TraesCS2A02G502300 , TraesCS6B02G180300 , TraesCS5B02G286000 , TraesCS2D02G502900 , TraesCS7A02G260500 , TraesCS5D02G294400 , TraesCS5D02G294400 , TraesCS2B02G530400 , TraesCS5A02G286700 , TraesCS5A02G286700 , TraesCS7B02G158500 , TraesCS3A02G432500 , TraesCS6A02G152000 , TraesCS2D02G502900 , TraesCS6D02G142100 , TraesCS3B02G468400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
2 Sobic.001G145100 RIO1 family protein, expressed K08818: cell division cycle 2-like
3 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
4 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
5 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
6 Sobic.001G106200 Homeobox domain containing protein, expressed -
7 Sobic.003G144200 Homeobox domain containing protein, expressed -
8 Sobic.010G033300 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
9 Sobic.001G163300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger protein-related, putative, expressed K11968: ariadne-1
10 Sobic.001G037150 - -
11 Sobic.002G267800 expressed protein -
12 Sobic.002G239900 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
13 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
14 Sobic.006G200200 expressed protein -
15 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
16 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
17 Sobic.003G040800 WRKY102, expressed -
18 Sobic.008G159400 expressed protein -
19 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
20 Sobic.008G010900 DNA repair protein Rad51, putative, expressed K10872: meiotic recombination protein DMC1


Gene co-expression network
sample Sobic002G257900 Sobic002G257900 Sobic003G017200 Sobic003G017200 Sobic002G257900--Sobic003G017200 Sobic001G145100 Sobic001G145100 Sobic002G257900--Sobic001G145100 Sobic001G106000 Sobic001G106000 Sobic002G257900--Sobic001G106000 Sobic003G378000 Sobic003G378000 Sobic002G257900--Sobic003G378000 Sobic003G223900 Sobic003G223900 Sobic002G257900--Sobic003G223900 Sobic001G106200 Sobic001G106200 Sobic002G257900--Sobic001G106200 Sobic003G144200 Sobic003G144200 Sobic002G257900--Sobic003G144200 Sobic010G033300 Sobic010G033300 Sobic002G257900--Sobic010G033300 Sobic001G163300 Sobic001G163300 Sobic002G257900--Sobic001G163300 Sobic003G017200--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic007G153001 Sobic007G153001 Sobic003G017200--Sobic007G153001 Sobic006G200200 Sobic006G200200 Sobic003G017200--Sobic006G200200 Sobic009G128300 Sobic009G128300 Sobic003G017200--Sobic009G128300 Sobic003G017200--Sobic003G144200 Sobic003G083000 Sobic003G083000 Sobic003G017200--Sobic003G083000 Sobic002G182800 Sobic002G182800 Sobic003G017200--Sobic002G182800 Sobic001G145100--Sobic003G017200 Sobic001G145100--Sobic007G153001 Sobic001G145100--Sobic001G106000 Sobic001G145100--Sobic001G106200 Sobic002G023900 Sobic002G023900 Sobic001G145100--Sobic002G023900 Sobic001G145100--Sobic006G200200 Sobic001G145100--Sobic003G040800 Sobic006G078350 Sobic006G078350 Sobic001G145100--Sobic006G078350 Sobic001G145100--Sobic003G144200 Sobic001G106000--Sobic003G040800 Sobic001G106000--Sobic003G017200 Sobic003G233900 Sobic003G233900 Sobic001G106000--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic001G106000--Sobic004G285100 Sobic001G106000--Sobic009G128300 Sobic001G106000--Sobic002G023900 Sobic001G430700 Sobic001G430700 Sobic001G106000--Sobic001G430700 Sobic003G227600 Sobic003G227600 Sobic001G106000--Sobic003G227600 Sobic001G106000--Sobic007G153001 Sobic001G155300 Sobic001G155300 Sobic003G378000--Sobic001G155300 Sobic004G170032 Sobic004G170032 Sobic003G378000--Sobic004G170032 Sobic002G110200 Sobic002G110200 Sobic003G378000--Sobic002G110200 Sobic004G353600 Sobic004G353600 Sobic003G378000--Sobic004G353600 Sobic003G378000--Sobic006G078350 Sobic007G143200 Sobic007G143200 Sobic003G378000--Sobic007G143200 Sobic003G378000--Sobic002G023900 Sobic007G143100 Sobic007G143100 Sobic003G378000--Sobic007G143100 Sobic007G169600 Sobic007G169600 Sobic003G378000--Sobic007G169600 Sobic004G262600 Sobic004G262600 Sobic003G223900--Sobic004G262600 Sobic004G234300 Sobic004G234300 Sobic003G223900--Sobic004G234300 Sobic002G270800 Sobic002G270800 Sobic003G223900--Sobic002G270800 Sobic003G410700 Sobic003G410700 Sobic003G223900--Sobic003G410700 Sobic001G139300 Sobic001G139300 Sobic003G223900--Sobic001G139300 Sobic004G336100 Sobic004G336100 Sobic003G223900--Sobic004G336100 Sobic001G217300 Sobic001G217300 Sobic003G223900--Sobic001G217300 Sobic003G223900--Sobic003G017200 Sobic003G223900--Sobic002G257900 Sobic001G106200--Sobic001G106000 Sobic002G010100 Sobic002G010100 Sobic001G106200--Sobic002G010100 Sobic001G106200--Sobic003G040800 Sobic001G106200--Sobic002G023900 Sobic001G106200--Sobic001G145100 Sobic002G267800 Sobic002G267800 Sobic001G106200--Sobic002G267800 Sobic001G106200--Sobic007G153001 Sobic001G106200--Sobic001G430700 Sobic001G450800 Sobic001G450800 Sobic001G106200--Sobic001G450800 Sobic003G144200--Sobic003G017200 Sobic003G144200--Sobic002G023900 Sobic001G157400 Sobic001G157400 Sobic003G144200--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic003G144200--Sobic009G159900 Sobic001G050800 Sobic001G050800 Sobic003G144200--Sobic001G050800 Sobic001G316900 Sobic001G316900 Sobic003G144200--Sobic001G316900 Sobic003G144200--Sobic001G106000 Sobic009G170100 Sobic009G170100 Sobic003G144200--Sobic009G170100 Sobic003G144200--Sobic007G153001 Sobic009G082600 Sobic009G082600 Sobic010G033300--Sobic009G082600 Sobic010G150200 Sobic010G150200 Sobic010G033300--Sobic010G150200 Sobic007G211300 Sobic007G211300 Sobic010G033300--Sobic007G211300 Sobic010G033300--Sobic003G223900 Sobic010G033300--Sobic002G257900 Sobic001G119700 Sobic001G119700 Sobic010G033300--Sobic001G119700 Sobic010G033300--Sobic004G234300 Sobic010G033300--Sobic003G410700 Sobic010G033300--Sobic002G267800 Sobic001G152600 Sobic001G152600 Sobic001G163300--Sobic001G152600 Sobic001G163300--Sobic001G217300 Sobic001G163300--Sobic003G017200 Sobic001G163300--Sobic001G316900 Sobic008G010900 Sobic008G010900 Sobic001G163300--Sobic008G010900 Sobic001G163300--Sobic006G200200 Sobic008G094800 Sobic008G094800 Sobic001G163300--Sobic008G094800 Sobic001G163300--Sobic003G144200 Sobic006G017600 Sobic006G017600 Sobic001G163300--Sobic006G017600
Octagon: transcription factors


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