Gene annotation
Transcriptome id Sobic.001G145100.1
Synonym Sb01g012660
Functional annotation RIO1 family protein, expressed
UniProt C5WQD4
Pfam PF07714
Panther DB PTHR24056 PTHR24056:SF195
NCBI CDD KOG0659; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 KOG0594Protein kinase PCTAIRE and related kinases
KEGG Orthology K08818; cell division cycle 2-like
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G67580 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os09g27350.1 : RIO1 family protein, expressed
MaizeGDB (Corn) Zm00025a017155 , Zm00025a017153 , Zm00025a017152 , Zm00025a017149
Brachypodium PNT69192 , KQJ81950
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
2 Sobic.007G153001 - -
3 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
4 Sobic.001G106200 Homeobox domain containing protein, expressed -
5 Sobic.002G023900 Homeobox domain containing protein, expressed -
6 Sobic.006G200200 expressed protein -
7 Sobic.003G040800 WRKY102, expressed -
8 Sobic.006G078350 - -
9 Sobic.003G144200 Homeobox domain containing protein, expressed -
10 Sobic.002G239900 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
11 Sobic.001G160200 expressed protein -
12 Sobic.003G423300 RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
13 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
14 Sobic.001G075101 - -
15 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
16 Sobic.002G267800 expressed protein -
17 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
18 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
19 Sobic.009G064400 cytochrome P450 71A1, putative, expressed -
20 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -


Gene co-expression network
sample Sobic001G145100 Sobic001G145100 Sobic003G017200 Sobic003G017200 Sobic001G145100--Sobic003G017200 Sobic007G153001 Sobic007G153001 Sobic001G145100--Sobic007G153001 Sobic001G106000 Sobic001G106000 Sobic001G145100--Sobic001G106000 Sobic001G106200 Sobic001G106200 Sobic001G145100--Sobic001G106200 Sobic002G023900 Sobic002G023900 Sobic001G145100--Sobic002G023900 Sobic006G200200 Sobic006G200200 Sobic001G145100--Sobic006G200200 Sobic003G040800 Sobic003G040800 Sobic001G145100--Sobic003G040800 Sobic006G078350 Sobic006G078350 Sobic001G145100--Sobic006G078350 Sobic003G144200 Sobic003G144200 Sobic001G145100--Sobic003G144200 Sobic003G017200--Sobic001G106000 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic003G017200--Sobic007G153001 Sobic003G017200--Sobic006G200200 Sobic009G128300 Sobic009G128300 Sobic003G017200--Sobic009G128300 Sobic003G017200--Sobic003G144200 Sobic003G083000 Sobic003G083000 Sobic003G017200--Sobic003G083000 Sobic002G182800 Sobic002G182800 Sobic003G017200--Sobic002G182800 Sobic001G075101 Sobic001G075101 Sobic007G153001--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic007G153001--Sobic002G023900 Sobic007G153001--Sobic002G342100 Sobic002G331450 Sobic002G331450 Sobic007G153001--Sobic002G331450 Sobic002G037400 Sobic002G037400 Sobic007G153001--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic007G153001--Sobic006G203000 Sobic002G325600 Sobic002G325600 Sobic007G153001--Sobic002G325600 Sobic001G106000--Sobic003G040800 Sobic001G106000--Sobic003G017200 Sobic003G233900 Sobic003G233900 Sobic001G106000--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic001G106000--Sobic004G285100 Sobic001G106000--Sobic009G128300 Sobic001G106000--Sobic002G023900 Sobic001G430700 Sobic001G430700 Sobic001G106000--Sobic001G430700 Sobic003G227600 Sobic003G227600 Sobic001G106000--Sobic003G227600 Sobic001G106000--Sobic007G153001 Sobic001G106200--Sobic001G106000 Sobic002G010100 Sobic002G010100 Sobic001G106200--Sobic002G010100 Sobic001G106200--Sobic003G040800 Sobic001G106200--Sobic002G023900 Sobic001G106200--Sobic001G145100 Sobic002G267800 Sobic002G267800 Sobic001G106200--Sobic002G267800 Sobic001G106200--Sobic007G153001 Sobic001G106200--Sobic001G430700 Sobic001G450800 Sobic001G450800 Sobic001G106200--Sobic001G450800 Sobic002G023900--Sobic001G075101 Sobic002G023900--Sobic006G203000 Sobic002G023900--Sobic007G153001 Sobic002G023900--Sobic002G037400 Sobic002G023900--Sobic007G169600 Sobic002G023900--Sobic003G083000 Sobic002G023900--Sobic002G331450 Sobic002G023900--Sobic003G040800 Sobic002G023900--Sobic001G106000 Sobic006G200200--Sobic003G017200 Sobic006G200200--Sobic003G083000 Sobic006G200200--Sobic007G169600 Sobic006G200200--Sobic001G075101 Sobic006G200200--Sobic002G331450 Sobic006G200200--Sobic002G037400 Sobic006G200200--Sobic002G182800 Sobic006G200200--Sobic006G203000 Sobic006G200200--Sobic002G325600 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic009G216900 Sobic009G216900 Sobic003G040800--Sobic009G216900 Sobic003G040800--Sobic004G285100 Sobic003G040800--Sobic003G017200 Sobic001G509400 Sobic001G509400 Sobic003G040800--Sobic001G509400 Sobic006G078350--Sobic001G075101 Sobic006G078350--Sobic007G169600 Sobic006G078350--Sobic006G203000 Sobic006G078350--Sobic002G037400 Sobic006G078350--Sobic003G083000 Sobic006G078350--Sobic002G023900 Sobic006G078350--Sobic007G153001 Sobic007G143100 Sobic007G143100 Sobic006G078350--Sobic007G143100 Sobic006G078300 Sobic006G078300 Sobic006G078350--Sobic006G078300 Sobic003G144200--Sobic003G017200 Sobic003G144200--Sobic002G023900 Sobic001G157400 Sobic001G157400 Sobic003G144200--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic003G144200--Sobic009G159900 Sobic001G050800 Sobic001G050800 Sobic003G144200--Sobic001G050800 Sobic001G316900 Sobic001G316900 Sobic003G144200--Sobic001G316900 Sobic003G144200--Sobic001G106000 Sobic009G170100 Sobic009G170100 Sobic003G144200--Sobic009G170100 Sobic003G144200--Sobic007G153001
Octagon: transcription factors


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