Gene annotation
| Transcriptome id | Sobic.002G239900.1 |
|---|---|
| Synonym | Sb02g027740 |
| Functional annotation | expressed protein |
| UniProt | C5X3Q7 |
| Pfam | PF10354 |
| Panther DB | PTHR11538 PTHR11538:SF43 |
| NCBI CDD | KOG4174; Uncharacterized conserved protein |
| KEGG Orthology | K19307; 25S rRNA (uracil2634-N3)-methyltransferase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G55790 : Domain of unknown function (DUF2431) |
|---|---|
| RAP-DB (Rice) | LOC_Os09g30210.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a047389 |
| Brachypodium | - |
| Barley | HORVU5Hr1G071480.1 , HORVU5Hr1G071370.1 |
| Wheat | TraesCS5D02G262900 , TraesCS5B02G254900 , TraesCS5A02G255700 , TraesCS5D02G263700 , TraesCS5B02G254200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G017200 | osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | K16223: protein FLOWERING LOCUS T |
| 2 | Sobic.006G200200 | expressed protein | - |
| 3 | Sobic.001G155300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed | K09840: 9-cis-epoxycarotenoid dioxygenase |
| 4 | Sobic.001G157400 | Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed | K09338: homeobox-leucine zipper protein |
| 5 | Sobic.007G153001 | - | - |
| 6 | Sobic.001G241600 | MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 7 | Sobic.001G160200 | expressed protein | - |
| 8 | Sobic.003G378000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed | K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) |
| 9 | Sobic.001G106000 | homeobox protein knotted-1, putative, expressed | - |
| 10 | Sobic.003G144200 | Homeobox domain containing protein, expressed | - |
| 11 | Sobic.002G023900 | Homeobox domain containing protein, expressed | - |
| 12 | Sobic.007G169600 | L1P family of ribosomal proteins domain containing protein, expressed | K02865: RP-L10Ae, large subunit ribosomal protein L10Ae |
| 13 | Sobic.003G083000 | glycosyl hydrolase family 10 protein, putative, expressed | - |
| 14 | Sobic.003G040800 | WRKY102, expressed | - |
| 15 | Sobic.001G075101 | - | - |
| 16 | Sobic.003G227600 | CPuORF29 - conserved peptide uORF-containing transcript, expressed | - |
| 17 | Sobic.001G145100 | RIO1 family protein, expressed | K08818: cell division cycle 2-like |
| 18 | Sobic.006G078350 | - | - |
| 19 | Sobic.001G469600 | "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed | - |
| 20 | Sobic.007G143100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
Gene co-expression network
Octagon: transcription factors
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