Gene annotation
Transcriptome id Sobic.006G200200.1
Synonym Sb06g027220
Functional annotation expressed protein
UniProt A0A1Z5RFM5
Pfam PF05056
Panther DB PTHR33103 PTHR33103:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43240 : Protein of unknown function (DUF674)
RAP-DB (Rice) LOC_Os04g50800.1 : expressed protein
MaizeGDB (Corn) Zm00025a056611 , Zm00025a009979
Brachypodium -
Barley HORVU2Hr1G114950.1
Wheat TraesCS2B02G465800 , TraesCS2B02G547700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
2 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
3 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
4 Sobic.001G075101 - -
5 Sobic.002G331450 - -
6 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
7 Sobic.002G182800 expressed protein -
8 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
9 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
10 Sobic.009G128300 CUE domain containing protein, expressed -
11 Sobic.001G509400 - -
12 Sobic.002G342100 no apical meristem protein, putative, expressed -
13 Sobic.001G469600 "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed -
14 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
15 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
16 Sobic.003G040800 WRKY102, expressed -
17 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
18 Sobic.007G153001 - -
19 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
20 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic006G200200 Sobic006G200200 Sobic003G017200 Sobic003G017200 Sobic006G200200--Sobic003G017200 Sobic003G083000 Sobic003G083000 Sobic006G200200--Sobic003G083000 Sobic007G169600 Sobic007G169600 Sobic006G200200--Sobic007G169600 Sobic001G075101 Sobic001G075101 Sobic006G200200--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic006G200200--Sobic002G331450 Sobic002G037400 Sobic002G037400 Sobic006G200200--Sobic002G037400 Sobic002G182800 Sobic002G182800 Sobic006G200200--Sobic002G182800 Sobic006G203000 Sobic006G203000 Sobic006G200200--Sobic006G203000 Sobic002G325600 Sobic002G325600 Sobic006G200200--Sobic002G325600 Sobic001G106000 Sobic001G106000 Sobic003G017200--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic007G153001 Sobic007G153001 Sobic003G017200--Sobic007G153001 Sobic003G017200--Sobic006G200200 Sobic009G128300 Sobic009G128300 Sobic003G017200--Sobic009G128300 Sobic003G144200 Sobic003G144200 Sobic003G017200--Sobic003G144200 Sobic003G017200--Sobic003G083000 Sobic003G017200--Sobic002G182800 Sobic003G083000--Sobic007G169600 Sobic003G083000--Sobic001G075101 Sobic003G083000--Sobic002G331450 Sobic003G083000--Sobic002G037400 Sobic003G083000--Sobic006G203000 Sobic005G016900 Sobic005G016900 Sobic003G083000--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic003G083000--Sobic007G143100 Sobic003G083000--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic003G083000--Sobic007G143200 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G169600--Sobic007G143200 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic001G075101--Sobic002G182800 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G331450--Sobic002G325600 Sobic002G331450--Sobic003G083000 Sobic002G110200 Sobic002G110200 Sobic002G331450--Sobic002G110200 Sobic002G331450--Sobic006G203000 Sobic002G331450--Sobic002G037400 Sobic002G331450--Sobic009G128300 Sobic002G331450--Sobic002G182800 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic006G026400 Sobic006G026400 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic002G037400--Sobic007G143100 Sobic002G037400--Sobic005G016900 Sobic002G182800--Sobic009G128300 Sobic002G182800--Sobic001G509400 Sobic003G233900 Sobic003G233900 Sobic002G182800--Sobic003G233900 Sobic002G182800--Sobic001G075101 Sobic002G182800--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G182800--Sobic003G227600 Sobic002G182800--Sobic003G040800 Sobic010G085400 Sobic010G085400 Sobic002G182800--Sobic010G085400 Sobic002G182800--Sobic002G342100 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic006G203000--Sobic002G110200 Sobic002G325600--Sobic007G169600 Sobic002G325600--Sobic002G331450 Sobic002G325600--Sobic001G075101 Sobic002G325600--Sobic003G083000 Sobic002G325600--Sobic006G203000 Sobic002G325600--Sobic002G037400 Sobic002G325600--Sobic001G509400 Sobic002G325600--Sobic005G016900 Sobic002G325600--Sobic007G143100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.