Gene annotation
Transcriptome id Sobic.002G400300.2,Sobic.002G400300.1,Sobic.002G400300.4,Sobic.002G400300.5,Sobic.002G400300.3
Synonym
Functional annotation expressed protein
UniProt A0A1B6QFY1 , A0A1W0W7L8
Pfam -
Panther DB PTHR32212 PTHR32212:SF78
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42720 : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
RAP-DB (Rice) LOC_Os07g45010.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G400300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G268000 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
2 Sobic.001G152600 RIO1 family protein, expressed -
3 Sobic.002G363000 csAtPR5, putative, expressed -
4 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
5 Sobic.001G186850 - -
6 Sobic.001G163300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger protein-related, putative, expressed K11968: ariadne-1
7 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
8 Sobic.002G106000 OsFBD15 - F-box and FBD domain containing protein, expressed -
9 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
10 Sobic.002G290100 expressed protein K08739: DNA mismatch repair protein MLH3
11 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
12 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
13 Sobic.010G090700 expressed protein -
14 Sobic.005G202000 expressed protein -
15 Sobic.004G321200 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
16 Sobic.002G270800 amino acid transporter, putative, expressed -
17 Sobic.001G223300 expressed protein -
18 Sobic.010G068800 glutamate receptor 2.6 precursor, putative, expressed -
19 Sobic.010G235700 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
20 Sobic.008G010900 DNA repair protein Rad51, putative, expressed K10872: meiotic recombination protein DMC1


Gene co-expression network
sample Sobic002G400300 Sobic002G400300 Sobic006G268000 Sobic006G268000 Sobic002G400300--Sobic006G268000 Sobic001G152600 Sobic001G152600 Sobic002G400300--Sobic001G152600 Sobic002G363000 Sobic002G363000 Sobic002G400300--Sobic002G363000 Sobic001G217300 Sobic001G217300 Sobic002G400300--Sobic001G217300 Sobic001G186850 Sobic001G186850 Sobic002G400300--Sobic001G186850 Sobic001G163300 Sobic001G163300 Sobic002G400300--Sobic001G163300 Sobic003G223900 Sobic003G223900 Sobic002G400300--Sobic003G223900 Sobic002G106000 Sobic002G106000 Sobic002G400300--Sobic002G106000 Sobic008G098700 Sobic008G098700 Sobic002G400300--Sobic008G098700 Sobic001G507500 Sobic001G507500 Sobic006G268000--Sobic001G507500 Sobic001G112000 Sobic001G112000 Sobic006G268000--Sobic001G112000 Sobic006G199700 Sobic006G199700 Sobic006G268000--Sobic006G199700 Sobic006G268000--Sobic002G400300 Sobic001G523100 Sobic001G523100 Sobic006G268000--Sobic001G523100 Sobic009G159300 Sobic009G159300 Sobic006G268000--Sobic009G159300 Sobic005G096700 Sobic005G096700 Sobic006G268000--Sobic005G096700 Sobic003G017200 Sobic003G017200 Sobic006G268000--Sobic003G017200 Sobic002G019500 Sobic002G019500 Sobic006G268000--Sobic002G019500 Sobic008G161100 Sobic008G161100 Sobic001G152600--Sobic008G161100 Sobic001G152600--Sobic001G163300 Sobic001G137400 Sobic001G137400 Sobic001G152600--Sobic001G137400 Sobic005G202000 Sobic005G202000 Sobic001G152600--Sobic005G202000 Sobic003G191600 Sobic003G191600 Sobic001G152600--Sobic003G191600 Sobic003G207000 Sobic003G207000 Sobic001G152600--Sobic003G207000 Sobic001G152600--Sobic001G217300 Sobic005G166100 Sobic005G166100 Sobic001G152600--Sobic005G166100 Sobic001G152600--Sobic008G098700 Sobic001G413800 Sobic001G413800 Sobic002G363000--Sobic001G413800 Sobic008G021000 Sobic008G021000 Sobic002G363000--Sobic008G021000 Sobic001G034500 Sobic001G034500 Sobic002G363000--Sobic001G034500 Sobic003G227100 Sobic003G227100 Sobic002G363000--Sobic003G227100 Sobic001G386100 Sobic001G386100 Sobic002G363000--Sobic001G386100 Sobic003G212900 Sobic003G212900 Sobic002G363000--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic002G363000--Sobic007G042900 Sobic001G477700 Sobic001G477700 Sobic002G363000--Sobic001G477700 Sobic006G203300 Sobic006G203300 Sobic002G363000--Sobic006G203300 Sobic001G217300--Sobic001G163300 Sobic001G217300--Sobic005G202000 Sobic003G031500 Sobic003G031500 Sobic001G217300--Sobic003G031500 Sobic001G217300--Sobic001G152600 Sobic001G316900 Sobic001G316900 Sobic001G217300--Sobic001G316900 Sobic004G262600 Sobic004G262600 Sobic001G217300--Sobic004G262600 Sobic003G356300 Sobic003G356300 Sobic001G217300--Sobic003G356300 Sobic001G217300--Sobic003G223900 Sobic006G203400 Sobic006G203400 Sobic001G217300--Sobic006G203400 Sobic003G439501 Sobic003G439501 Sobic001G186850--Sobic003G439501 Sobic007G010000 Sobic007G010000 Sobic001G186850--Sobic007G010000 Sobic001G186850--Sobic005G096700 Sobic001G283000 Sobic001G283000 Sobic001G186850--Sobic001G283000 Sobic001G186850--Sobic002G363000 Sobic003G036500 Sobic003G036500 Sobic001G186850--Sobic003G036500 Sobic001G186850--Sobic002G400300 Sobic004G305200 Sobic004G305200 Sobic001G186850--Sobic004G305200 Sobic004G351100 Sobic004G351100 Sobic001G186850--Sobic004G351100 Sobic001G163300--Sobic001G152600 Sobic001G163300--Sobic001G217300 Sobic001G163300--Sobic003G017200 Sobic001G163300--Sobic001G316900 Sobic008G010900 Sobic008G010900 Sobic001G163300--Sobic008G010900 Sobic006G200200 Sobic006G200200 Sobic001G163300--Sobic006G200200 Sobic008G094800 Sobic008G094800 Sobic001G163300--Sobic008G094800 Sobic003G144200 Sobic003G144200 Sobic001G163300--Sobic003G144200 Sobic006G017600 Sobic006G017600 Sobic001G163300--Sobic006G017600 Sobic003G223900--Sobic004G262600 Sobic004G234300 Sobic004G234300 Sobic003G223900--Sobic004G234300 Sobic002G270800 Sobic002G270800 Sobic003G223900--Sobic002G270800 Sobic003G410700 Sobic003G410700 Sobic003G223900--Sobic003G410700 Sobic001G139300 Sobic001G139300 Sobic003G223900--Sobic001G139300 Sobic004G336100 Sobic004G336100 Sobic003G223900--Sobic004G336100 Sobic003G223900--Sobic001G217300 Sobic003G223900--Sobic003G017200 Sobic002G257900 Sobic002G257900 Sobic003G223900--Sobic002G257900 Sobic007G048900 Sobic007G048900 Sobic002G106000--Sobic007G048900 Sobic002G106200 Sobic002G106200 Sobic002G106000--Sobic002G106200 Sobic007G216800 Sobic007G216800 Sobic002G106000--Sobic007G216800 Sobic007G214800 Sobic007G214800 Sobic002G106000--Sobic007G214800 Sobic007G118075 Sobic007G118075 Sobic002G106000--Sobic007G118075 Sobic010G090700 Sobic010G090700 Sobic002G106000--Sobic010G090700 Sobic007G080200 Sobic007G080200 Sobic002G106000--Sobic007G080200 Sobic002G158300 Sobic002G158300 Sobic002G106000--Sobic002G158300 Sobic002G106000--Sobic002G019500 Sobic006G215800 Sobic006G215800 Sobic008G098700--Sobic006G215800 Sobic002G299200 Sobic002G299200 Sobic008G098700--Sobic002G299200 Sobic003G090000 Sobic003G090000 Sobic008G098700--Sobic003G090000 Sobic009G152120 Sobic009G152120 Sobic008G098700--Sobic009G152120 Sobic003G027000 Sobic003G027000 Sobic008G098700--Sobic003G027000 Sobic001G500500 Sobic001G500500 Sobic008G098700--Sobic001G500500 Sobic008G098700--Sobic010G090700 Sobic008G098700--Sobic002G106200 Sobic003G396500 Sobic003G396500 Sobic008G098700--Sobic003G396500
Octagon: transcription factors


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