Gene annotation
Transcriptome id Sobic.004G262600.1
Synonym Sb04g030080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
expressed protein
UniProt C5XZX8
Pfam PF13704
Panther DB PTHR21461 PTHR21461:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33570 : Domain of unknown function (DUF23)
RAP-DB (Rice) LOC_Os02g48190.1 : expressed protein
MaizeGDB (Corn) Zm00025a042803 , Zm00025a051498 , Zm00025a021790
Brachypodium KQK00998 , KQK17618 , KQK17619 , KQK00997 , KQK17620 , PNT75625 , KQK18454
Barley HORVU1Hr1G016710.18 , HORVU1Hr1G016710.16 , HORVU1Hr1G016710.17 , HORVU1Hr1G016710.14 , HORVU1Hr1G016710.15 , HORVU1Hr1G016710.12 , HORVU1Hr1G016710.13 , HORVU1Hr1G016710.10 , HORVU1Hr1G016710.4 , HORVU1Hr1G016710.5 , HORVU1Hr1G016710.6 , HORVU1Hr1G016710.1 , HORVU7Hr1G093190.7 , HORVU7Hr1G093190.6 , HORVU7Hr1G093190.5 , HORVU7Hr1G093190.3 , HORVU7Hr1G093190.2 , HORVU7Hr1G093190.1 , HORVU7Hr1G093190.8 , HORVU0Hr1G020270.3 , HORVU0Hr1G020270.2 , HORVU0Hr1G020270.1 , HORVU0Hr1G020270.5 , HORVU0Hr1G020270.4 , HORVU1Hr1G016710.3 , HORVU1Hr1G016710.22 , HORVU1Hr1G016710.21 , HORVU1Hr1G016710.20 , HORVU6Hr1G069940.1 , HORVU6Hr1G069940.2 , HORVU6Hr1G069940.3 , HORVU6Hr1G069940.4
Wheat TraesCS6D02G258100 , TraesCS7D02G229300 , TraesCS7D02G229300 , TraesCS7A02G225100 , TraesCS7B02G194500 , TraesCS7D02G390400 , TraesCS6A02G277500 , TraesCS7A02G394900 , TraesCS7B02G296900 , TraesCS6B02G305500
Populus -


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cDNA sequences
Sobic.004G262600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410700 exostosin family domain containing protein, expressed -
2 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
3 Sobic.004G261200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G188800 cyclic nucleotide-gated ion channel 2, putative, expressed K05391: cyclic nucleotide gated channel, plant
5 Sobic.003G399000 expressed protein -
6 Sobic.009G194200 CSLC7 - cellulose synthase-like family C, expressed -
7 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
8 Sobic.001G139300 expressed protein -
9 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
10 Sobic.001G469600 "similar to Mannitol transporter, up-regulated under drought stress, mapped onto a stay green QTL (QSTG meta4.1)"(PubMedID : 24655390)@similar to Mannitol transporter(PubMedID : 24655390)@transporter family protein, putative, expressed -
11 Sobic.004G296200 inactive receptor kinase At2g26730 precursor, putative, expressed -
12 Sobic.002G009900 phytosulfokine receptor precursor, putative, expressed -
13 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
14 Sobic.002G270800 amino acid transporter, putative, expressed -
15 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
16 Sobic.006G156300 WD-40 repeat family protein, putative, expressed -
17 Sobic.001G316900 bZIP family transcription factor, putative, expressed -
18 Sobic.002G321600 - -
19 Sobic.001G061900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
20 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G262600 Sobic004G262600 Sobic003G410700 Sobic003G410700 Sobic004G262600--Sobic003G410700 Sobic003G223900 Sobic003G223900 Sobic004G262600--Sobic003G223900 Sobic004G261200 Sobic004G261200 Sobic004G262600--Sobic004G261200 Sobic009G188800 Sobic009G188800 Sobic004G262600--Sobic009G188800 Sobic003G399000 Sobic003G399000 Sobic004G262600--Sobic003G399000 Sobic009G194200 Sobic009G194200 Sobic004G262600--Sobic009G194200 Sobic001G217300 Sobic001G217300 Sobic004G262600--Sobic001G217300 Sobic001G139300 Sobic001G139300 Sobic004G262600--Sobic001G139300 Sobic003G017200 Sobic003G017200 Sobic004G262600--Sobic003G017200 Sobic003G410700--Sobic004G262600 Sobic003G410700--Sobic004G261200 Sobic003G410700--Sobic009G194200 Sobic003G389100 Sobic003G389100 Sobic003G410700--Sobic003G389100 Sobic004G296200 Sobic004G296200 Sobic003G410700--Sobic004G296200 Sobic003G094600 Sobic003G094600 Sobic003G410700--Sobic003G094600 Sobic001G440500 Sobic001G440500 Sobic003G410700--Sobic001G440500 Sobic003G410700--Sobic003G223900 Sobic001G436100 Sobic001G436100 Sobic003G410700--Sobic001G436100 Sobic003G223900--Sobic004G262600 Sobic004G234300 Sobic004G234300 Sobic003G223900--Sobic004G234300 Sobic002G270800 Sobic002G270800 Sobic003G223900--Sobic002G270800 Sobic003G223900--Sobic003G410700 Sobic003G223900--Sobic001G139300 Sobic004G336100 Sobic004G336100 Sobic003G223900--Sobic004G336100 Sobic003G223900--Sobic001G217300 Sobic003G223900--Sobic003G017200 Sobic002G257900 Sobic002G257900 Sobic003G223900--Sobic002G257900 Sobic003G144600 Sobic003G144600 Sobic004G261200--Sobic003G144600 Sobic004G278200 Sobic004G278200 Sobic004G261200--Sobic004G278200 Sobic004G261200--Sobic009G194200 Sobic004G261200--Sobic003G410700 Sobic007G180900 Sobic007G180900 Sobic004G261200--Sobic007G180900 Sobic003G293600 Sobic003G293600 Sobic004G261200--Sobic003G293600 Sobic001G063600 Sobic001G063600 Sobic004G261200--Sobic001G063600 Sobic003G032900 Sobic003G032900 Sobic004G261200--Sobic003G032900 Sobic007G166900 Sobic007G166900 Sobic004G261200--Sobic007G166900 Sobic009G188800--Sobic004G262600 Sobic009G188800--Sobic001G139300 Sobic002G321600 Sobic002G321600 Sobic009G188800--Sobic002G321600 Sobic005G115800 Sobic005G115800 Sobic009G188800--Sobic005G115800 Sobic009G188800--Sobic003G223900 Sobic003G361300 Sobic003G361300 Sobic009G188800--Sobic003G361300 Sobic009G188800--Sobic003G399000 Sobic004G331300 Sobic004G331300 Sobic009G188800--Sobic004G331300 Sobic002G192101 Sobic002G192101 Sobic009G188800--Sobic002G192101 Sobic003G399000--Sobic004G262600 Sobic004G204400 Sobic004G204400 Sobic003G399000--Sobic004G204400 Sobic009G159900 Sobic009G159900 Sobic003G399000--Sobic009G159900 Sobic001G537300 Sobic001G537300 Sobic003G399000--Sobic001G537300 Sobic009G121750 Sobic009G121750 Sobic003G399000--Sobic009G121750 Sobic004G053300 Sobic004G053300 Sobic003G399000--Sobic004G053300 Sobic003G399000--Sobic003G361300 Sobic003G399000--Sobic001G217300 Sobic001G316900 Sobic001G316900 Sobic003G399000--Sobic001G316900 Sobic010G008600 Sobic010G008600 Sobic009G194200--Sobic010G008600 Sobic009G194200--Sobic001G436100 Sobic009G194200--Sobic004G261200 Sobic009G194200--Sobic003G410700 Sobic001G061900 Sobic001G061900 Sobic009G194200--Sobic001G061900 Sobic006G242100 Sobic006G242100 Sobic009G194200--Sobic006G242100 Sobic009G194200--Sobic004G262600 Sobic010G101400 Sobic010G101400 Sobic009G194200--Sobic010G101400 Sobic001G038200 Sobic001G038200 Sobic009G194200--Sobic001G038200 Sobic001G163300 Sobic001G163300 Sobic001G217300--Sobic001G163300 Sobic005G202000 Sobic005G202000 Sobic001G217300--Sobic005G202000 Sobic003G031500 Sobic003G031500 Sobic001G217300--Sobic003G031500 Sobic001G152600 Sobic001G152600 Sobic001G217300--Sobic001G152600 Sobic001G217300--Sobic001G316900 Sobic001G217300--Sobic004G262600 Sobic003G356300 Sobic003G356300 Sobic001G217300--Sobic003G356300 Sobic001G217300--Sobic003G223900 Sobic006G203400 Sobic006G203400 Sobic001G217300--Sobic006G203400 Sobic001G139300--Sobic003G410700 Sobic001G139300--Sobic003G223900 Sobic001G139300--Sobic004G262600 Sobic001G139300--Sobic009G188800 Sobic004G218900 Sobic004G218900 Sobic001G139300--Sobic004G218900 Sobic001G139300--Sobic004G234300 Sobic001G312600 Sobic001G312600 Sobic001G139300--Sobic001G312600 Sobic002G206700 Sobic002G206700 Sobic001G139300--Sobic002G206700 Sobic003G390700 Sobic003G390700 Sobic001G139300--Sobic003G390700 Sobic001G106000 Sobic001G106000 Sobic003G017200--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic007G153001 Sobic007G153001 Sobic003G017200--Sobic007G153001 Sobic006G200200 Sobic006G200200 Sobic003G017200--Sobic006G200200 Sobic009G128300 Sobic009G128300 Sobic003G017200--Sobic009G128300 Sobic003G144200 Sobic003G144200 Sobic003G017200--Sobic003G144200 Sobic003G083000 Sobic003G083000 Sobic003G017200--Sobic003G083000 Sobic002G182800 Sobic002G182800 Sobic003G017200--Sobic002G182800
Octagon: transcription factors


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