Gene annotation
Transcriptome id Sobic.006G156300.1
Synonym Sb06g023320
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5YCJ9
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G15470 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g42590.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032104 , Zm00025a056566 , Zm00025a009449 , Zm00025a010466 , Zm00025a021003 , Zm00025a053970 , Zm00025a001886 , Zm00025a026404 , Zm00025a035358
Brachypodium KQK00493
Barley HORVU2Hr1G091010.11 , HORVU2Hr1G091010.10 , HORVU2Hr1G091010.13 , HORVU2Hr1G091010.12 , HORVU6Hr1G060150.8 , HORVU6Hr1G060150.4 , HORVU6Hr1G060150.5 , HORVU6Hr1G060150.6 , HORVU6Hr1G060150.7 , HORVU6Hr1G060150.2 , HORVU6Hr1G060150.3 , HORVU6Hr1G060150.26 , HORVU6Hr1G060150.25 , HORVU6Hr1G060150.23 , HORVU6Hr1G060150.22 , HORVU6Hr1G060150.21 , HORVU6Hr1G060150.20 , HORVU2Hr1G091010.9 , HORVU2Hr1G091010.8 , HORVU2Hr1G091010.5 , HORVU2Hr1G091010.4 , HORVU2Hr1G091010.7 , HORVU2Hr1G091010.6 , HORVU2Hr1G091010.1 , HORVU2Hr1G091010.3 , HORVU2Hr1G091010.2 , HORVU6Hr1G060150.18 , HORVU6Hr1G060150.19 , HORVU6Hr1G060150.14 , HORVU6Hr1G060150.15 , HORVU6Hr1G060150.12 , HORVU6Hr1G060150.13 , HORVU6Hr1G060150.10 , HORVU6Hr1G060150.11
Wheat TraesCS6D02G217900 , TraesCS6D02G217900 , TraesCS6A02G235200 , TraesCS2B02G390600 , TraesCS2A02G373500 , TraesCS2A02G373500 , TraesCS2A02G373500 , TraesCS2A02G373500 , TraesCS2D02G369700 , TraesCS2D02G369700 , TraesCS2D02G369700 , TraesCS2B02G390600 , TraesCS6B02G263900 , TraesCS6B02G263900
Populus PNT13077 , PNT13078 , PNT59333


JBrowse

Open New Page


cDNA sequences
Sobic.006G156300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G112100 expressed protein -
2 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
3 Sobic.001G119800 expressed protein -
4 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
5 Sobic.007G112000 - -
6 Sobic.004G279100 CAMK_CAMK_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.003G340900 SAG20, putative, expressed -
8 Sobic.002G427300 protein phosphotase protein, putative, expressed -
9 Sobic.003G275000 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
10 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
11 Sobic.002G148300 - -
12 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
13 Sobic.001G361300 CDPK - calcium/calmodulin dependent serine/threonine protein kinase 1(PubMedID : 31721651)@CAMK_CAMK_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
14 Sobic.004G262600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
15 Sobic.003G389300 cyclin-related protein, putative, expressed -
16 Sobic.007G056700 AP2/EREBP transcription factor BABY BOOM, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
17 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
18 Sobic.003G410700 exostosin family domain containing protein, expressed -
19 Sobic.006G257001 - -
20 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic006G156300 Sobic006G156300 Sobic006G112100 Sobic006G112100 Sobic006G156300--Sobic006G112100 Sobic003G259400 Sobic003G259400 Sobic006G156300--Sobic003G259400 Sobic001G119800 Sobic001G119800 Sobic006G156300--Sobic001G119800 Sobic001G422700 Sobic001G422700 Sobic006G156300--Sobic001G422700 Sobic007G112000 Sobic007G112000 Sobic006G156300--Sobic007G112000 Sobic004G279100 Sobic004G279100 Sobic006G156300--Sobic004G279100 Sobic003G340900 Sobic003G340900 Sobic006G156300--Sobic003G340900 Sobic002G427300 Sobic002G427300 Sobic006G156300--Sobic002G427300 Sobic003G275000 Sobic003G275000 Sobic006G156300--Sobic003G275000 Sobic006G112100--Sobic006G156300 Sobic006G112100--Sobic001G119800 Sobic003G389300 Sobic003G389300 Sobic006G112100--Sobic003G389300 Sobic004G316700 Sobic004G316700 Sobic006G112100--Sobic004G316700 Sobic008G013300 Sobic008G013300 Sobic006G112100--Sobic008G013300 Sobic009G229300 Sobic009G229300 Sobic006G112100--Sobic009G229300 Sobic010G017800 Sobic010G017800 Sobic006G112100--Sobic010G017800 Sobic009G126000 Sobic009G126000 Sobic006G112100--Sobic009G126000 Sobic001G163400 Sobic001G163400 Sobic006G112100--Sobic001G163400 Sobic009G231700 Sobic009G231700 Sobic003G259400--Sobic009G231700 Sobic003G259400--Sobic003G340900 Sobic005G216300 Sobic005G216300 Sobic003G259400--Sobic005G216300 Sobic009G226400 Sobic009G226400 Sobic003G259400--Sobic009G226400 Sobic003G099300 Sobic003G099300 Sobic003G259400--Sobic003G099300 Sobic003G259400--Sobic010G017800 Sobic001G067900 Sobic001G067900 Sobic003G259400--Sobic001G067900 Sobic001G010600 Sobic001G010600 Sobic003G259400--Sobic001G010600 SobicK004100 SobicK004100 Sobic003G259400--SobicK004100 Sobic008G015200 Sobic008G015200 Sobic001G119800--Sobic008G015200 Sobic001G119800--Sobic002G427300 Sobic001G119800--Sobic003G389300 Sobic001G119800--Sobic006G112100 Sobic003G435500 Sobic003G435500 Sobic001G119800--Sobic003G435500 Sobic003G314700 Sobic003G314700 Sobic001G119800--Sobic003G314700 Sobic006G281000 Sobic006G281000 Sobic001G119800--Sobic006G281000 Sobic001G385400 Sobic001G385400 Sobic001G119800--Sobic001G385400 Sobic001G119800--Sobic006G156300 Sobic002G139000 Sobic002G139000 Sobic001G422700--Sobic002G139000 Sobic001G422700--Sobic001G010600 Sobic001G507400 Sobic001G507400 Sobic001G422700--Sobic001G507400 Sobic001G422700--Sobic003G259400 Sobic003G247900 Sobic003G247900 Sobic001G422700--Sobic003G247900 Sobic004G027000 Sobic004G027000 Sobic001G422700--Sobic004G027000 Sobic004G225300 Sobic004G225300 Sobic001G422700--Sobic004G225300 Sobic001G329300 Sobic001G329300 Sobic001G422700--Sobic001G329300 Sobic002G272600 Sobic002G272600 Sobic001G422700--Sobic002G272600 Sobic006G044000 Sobic006G044000 Sobic007G112000--Sobic006G044000 Sobic006G180700 Sobic006G180700 Sobic007G112000--Sobic006G180700 Sobic006G226300 Sobic006G226300 Sobic007G112000--Sobic006G226300 Sobic006G032900 Sobic006G032900 Sobic007G112000--Sobic006G032900 Sobic003G006400 Sobic003G006400 Sobic007G112000--Sobic003G006400 Sobic008G009600 Sobic008G009600 Sobic007G112000--Sobic008G009600 Sobic008G147200 Sobic008G147200 Sobic007G112000--Sobic008G147200 Sobic004G011000 Sobic004G011000 Sobic007G112000--Sobic004G011000 Sobic008G098600 Sobic008G098600 Sobic007G112000--Sobic008G098600 Sobic003G113800 Sobic003G113800 Sobic004G279100--Sobic003G113800 Sobic004G279100--Sobic006G156300 Sobic002G134600 Sobic002G134600 Sobic004G279100--Sobic002G134600 Sobic002G235300 Sobic002G235300 Sobic004G279100--Sobic002G235300 Sobic010G009800 Sobic010G009800 Sobic004G279100--Sobic010G009800 Sobic003G316700 Sobic003G316700 Sobic004G279100--Sobic003G316700 Sobic007G165900 Sobic007G165900 Sobic004G279100--Sobic007G165900 Sobic005G036800 Sobic005G036800 Sobic004G279100--Sobic005G036800 Sobic002G257200 Sobic002G257200 Sobic004G279100--Sobic002G257200 Sobic003G340900--Sobic010G017800 Sobic003G340900--Sobic003G259400 Sobic001G078100 Sobic001G078100 Sobic003G340900--Sobic001G078100 Sobic002G143900 Sobic002G143900 Sobic003G340900--Sobic002G143900 Sobic003G340900--Sobic006G044000 Sobic001G518400 Sobic001G518400 Sobic003G340900--Sobic001G518400 Sobic003G412300 Sobic003G412300 Sobic003G340900--Sobic003G412300 Sobic007G027700 Sobic007G027700 Sobic003G340900--Sobic007G027700 Sobic003G340900--Sobic005G216300 Sobic006G208400 Sobic006G208400 Sobic002G427300--Sobic006G208400 Sobic002G427300--Sobic001G119800 Sobic002G427300--Sobic006G281000 Sobic006G140600 Sobic006G140600 Sobic002G427300--Sobic006G140600 Sobic010G085200 Sobic010G085200 Sobic002G427300--Sobic010G085200 Sobic004G006700 Sobic004G006700 Sobic002G427300--Sobic004G006700 Sobic002G427300--Sobic003G314700 Sobic001G460500 Sobic001G460500 Sobic002G427300--Sobic001G460500 Sobic001G036800 Sobic001G036800 Sobic002G427300--Sobic001G036800 Sobic003G275000--Sobic006G281000 Sobic003G275000--Sobic010G017800 Sobic003G275000--Sobic003G259400 Sobic003G275000--Sobic002G427300 Sobic003G275000--Sobic006G032900 Sobic003G275000--Sobic006G156300 Sobic003G275000--Sobic003G340900 Sobic003G275000--Sobic006G112100 Sobic006G268300 Sobic006G268300 Sobic003G275000--Sobic006G268300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.