Gene annotation
Transcriptome id Sobic.006G112100.4,Sobic.006G112100.6,Sobic.006G112100.5,Sobic.006G112100.1,Sobic.006G112100.3,Sobic.006G112100.2
Synonym Sb06g019400
Functional annotation expressed protein
UniProt A0A1Z5RDB1 , A0A1Z5RDA4 , A0A1Z5RDS3 , C5YA87
Pfam -
Panther DB PTHR33914 PTHR33914:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03810 : 18S pre-ribosomal assembly protein gar2-related
RAP-DB (Rice) LOC_Os04g39240.1 : expressed protein
MaizeGDB (Corn) Zm00025a056247 , Zm00025a011070
Brachypodium KQJ83055 , KQJ83056 , KQJ83057 , PNT68926 , PNT68925 , PNT68924 , KQK00066 , PNT61251
Barley HORVU2Hr1G081400.9 , HORVU2Hr1G081400.8 , HORVU2Hr1G081400.3 , HORVU2Hr1G081400.2 , HORVU2Hr1G081400.1 , HORVU2Hr1G081400.7 , HORVU2Hr1G081400.6 , HORVU2Hr1G081400.5 , HORVU2Hr1G081400.4 , HORVU2Hr1G081400.10
Wheat TraesCS2A02G335000 , TraesCS2D02G329300 , TraesCS2D02G329300
Populus -


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cDNA sequences
Sobic.006G112100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G156300 WD-40 repeat family protein, putative, expressed -
2 Sobic.001G119800 expressed protein -
3 Sobic.003G389300 cyclin-related protein, putative, expressed -
4 Sobic.004G316700 MYB family transcription factor, putative, expressed -
5 Sobic.008G013300 expressed protein -
6 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
7 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
8 Sobic.009G126000 mannosylglycoprotein endo-beta-mannosidase, putative, expressed K18577: mannosylglycoprotein endo-beta-mannosidase
9 Sobic.001G163400 roothairless 1, putative, expressed -
10 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
11 Sobic.003G275000 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
12 Sobic.008G040700 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
13 Sobic.009G226400 dynamin family protein, putative, expressed -
14 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
15 Sobic.001G361300 CDPK - calcium/calmodulin dependent serine/threonine protein kinase 1(PubMedID : 31721651)@CAMK_CAMK_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
16 Sobic.002G148300 - -
17 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
18 Sobic.006G281000 methyltransferase, putative, expressed -
19 Sobic.001G015800 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.009G082600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic006G112100 Sobic006G112100 Sobic006G156300 Sobic006G156300 Sobic006G112100--Sobic006G156300 Sobic001G119800 Sobic001G119800 Sobic006G112100--Sobic001G119800 Sobic003G389300 Sobic003G389300 Sobic006G112100--Sobic003G389300 Sobic004G316700 Sobic004G316700 Sobic006G112100--Sobic004G316700 Sobic008G013300 Sobic008G013300 Sobic006G112100--Sobic008G013300 Sobic009G229300 Sobic009G229300 Sobic006G112100--Sobic009G229300 Sobic010G017800 Sobic010G017800 Sobic006G112100--Sobic010G017800 Sobic009G126000 Sobic009G126000 Sobic006G112100--Sobic009G126000 Sobic001G163400 Sobic001G163400 Sobic006G112100--Sobic001G163400 Sobic006G156300--Sobic006G112100 Sobic003G259400 Sobic003G259400 Sobic006G156300--Sobic003G259400 Sobic006G156300--Sobic001G119800 Sobic001G422700 Sobic001G422700 Sobic006G156300--Sobic001G422700 Sobic007G112000 Sobic007G112000 Sobic006G156300--Sobic007G112000 Sobic004G279100 Sobic004G279100 Sobic006G156300--Sobic004G279100 Sobic003G340900 Sobic003G340900 Sobic006G156300--Sobic003G340900 Sobic002G427300 Sobic002G427300 Sobic006G156300--Sobic002G427300 Sobic003G275000 Sobic003G275000 Sobic006G156300--Sobic003G275000 Sobic008G015200 Sobic008G015200 Sobic001G119800--Sobic008G015200 Sobic001G119800--Sobic002G427300 Sobic001G119800--Sobic003G389300 Sobic001G119800--Sobic006G112100 Sobic003G435500 Sobic003G435500 Sobic001G119800--Sobic003G435500 Sobic003G314700 Sobic003G314700 Sobic001G119800--Sobic003G314700 Sobic006G281000 Sobic006G281000 Sobic001G119800--Sobic006G281000 Sobic001G385400 Sobic001G385400 Sobic001G119800--Sobic001G385400 Sobic001G119800--Sobic006G156300 Sobic008G040700 Sobic008G040700 Sobic003G389300--Sobic008G040700 Sobic003G199200 Sobic003G199200 Sobic003G389300--Sobic003G199200 Sobic001G015800 Sobic001G015800 Sobic003G389300--Sobic001G015800 Sobic003G389300--Sobic001G163400 Sobic004G344901 Sobic004G344901 Sobic003G389300--Sobic004G344901 Sobic003G389300--Sobic001G119800 Sobic001G051700 Sobic001G051700 Sobic003G389300--Sobic001G051700 Sobic003G227100 Sobic003G227100 Sobic003G389300--Sobic003G227100 Sobic003G389300--Sobic006G281000 Sobic009G131900 Sobic009G131900 Sobic004G316700--Sobic009G131900 Sobic006G131000 Sobic006G131000 Sobic004G316700--Sobic006G131000 Sobic004G286500 Sobic004G286500 Sobic004G316700--Sobic004G286500 Sobic003G119700 Sobic003G119700 Sobic004G316700--Sobic003G119700 Sobic003G150100 Sobic003G150100 Sobic004G316700--Sobic003G150100 Sobic006G174850 Sobic006G174850 Sobic004G316700--Sobic006G174850 Sobic008G046500 Sobic008G046500 Sobic004G316700--Sobic008G046500 Sobic002G117400 Sobic002G117400 Sobic004G316700--Sobic002G117400 Sobic004G323700 Sobic004G323700 Sobic004G316700--Sobic004G323700 Sobic002G297600 Sobic002G297600 Sobic008G013300--Sobic002G297600 Sobic001G115500 Sobic001G115500 Sobic008G013300--Sobic001G115500 Sobic003G361400 Sobic003G361400 Sobic008G013300--Sobic003G361400 Sobic002G318600 Sobic002G318600 Sobic008G013300--Sobic002G318600 Sobic007G010900 Sobic007G010900 Sobic008G013300--Sobic007G010900 Sobic009G073400 Sobic009G073400 Sobic008G013300--Sobic009G073400 Sobic003G259600 Sobic003G259600 Sobic008G013300--Sobic003G259600 Sobic002G264300 Sobic002G264300 Sobic008G013300--Sobic002G264300 Sobic008G013300--Sobic008G040700 Sobic008G003600 Sobic008G003600 Sobic009G229300--Sobic008G003600 Sobic001G512000 Sobic001G512000 Sobic009G229300--Sobic001G512000 Sobic001G230100 Sobic001G230100 Sobic009G229300--Sobic001G230100 Sobic003G052400 Sobic003G052400 Sobic009G229300--Sobic003G052400 Sobic010G105600 Sobic010G105600 Sobic009G229300--Sobic010G105600 Sobic001G237500 Sobic001G237500 Sobic009G229300--Sobic001G237500 Sobic002G131900 Sobic002G131900 Sobic009G229300--Sobic002G131900 Sobic004G337900 Sobic004G337900 Sobic009G229300--Sobic004G337900 Sobic002G362900 Sobic002G362900 Sobic009G229300--Sobic002G362900 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic001G518400 Sobic001G518400 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic001G335900 Sobic001G335900 Sobic010G017800--Sobic001G335900 Sobic009G229600 Sobic009G229600 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic010G017800--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic010G017800--Sobic001G371200 Sobic010G017800--Sobic003G340900 Sobic010G106900 Sobic010G106900 Sobic009G126000--Sobic010G106900 Sobic002G127400 Sobic002G127400 Sobic009G126000--Sobic002G127400 Sobic009G213100 Sobic009G213100 Sobic009G126000--Sobic009G213100 Sobic009G055400 Sobic009G055400 Sobic009G126000--Sobic009G055400 Sobic005G059400 Sobic005G059400 Sobic009G126000--Sobic005G059400 Sobic003G347300 Sobic003G347300 Sobic009G126000--Sobic003G347300 Sobic010G099800 Sobic010G099800 Sobic009G126000--Sobic010G099800 Sobic009G126000--Sobic005G216300 Sobic009G045200 Sobic009G045200 Sobic009G126000--Sobic009G045200 Sobic001G163400--Sobic004G344901 Sobic003G337300 Sobic003G337300 Sobic001G163400--Sobic003G337300 Sobic001G163400--Sobic001G015800 Sobic001G163400--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic001G163400--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic001G163400--Sobic001G096000 Sobic001G415300 Sobic001G415300 Sobic001G163400--Sobic001G415300 Sobic001G124200 Sobic001G124200 Sobic001G163400--Sobic001G124200 Sobic006G163800 Sobic006G163800 Sobic001G163400--Sobic006G163800
Octagon: transcription factors


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