Gene annotation
Transcriptome id Sobic.009G082600.1
Synonym Sb09g007240, PERK1, ATPERK1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
protein kinase domain containing protein, expressed
UniProt C5YUU0
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF89
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G24550 : proline extensin-like receptor kinase 1
RAP-DB (Rice) LOC_Os05g12680.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a043271 , Zm00025a004807 , Zm00025a037572
Brachypodium KQK03391 , KQK07015 , KQK07014 , PNT71607
Barley HORVU3Hr1G030900.1 , HORVU3Hr1G030900.7 , HORVU3Hr1G030900.6 , HORVU3Hr1G030900.5 , HORVU3Hr1G030900.8 , HORVU1Hr1G030140.1 , HORVU1Hr1G030140.2 , HORVU1Hr1G030140.7 , HORVU1Hr1G030140.3 , HORVU1Hr1G030140.5 , HORVU1Hr1G030140.4 , HORVU1Hr1G030140.6
Wheat TraesCS1B02G147000 , TraesCS1B02G147000 , TraesCS1D02G126300 , TraesCS3D02G160000 , TraesCS3A02G152200 , TraesCS3B02G179300 , TraesCS1A02G127900
Populus PNT43244


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G039200 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
2 Sobic.010G033300 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
3 Sobic.001G119700 transcription regulator, putative, expressed -
4 Sobic.001G382400 TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
5 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
6 Sobic.002G272600 TBC domain containing protein, expressed -
7 Sobic.004G305400 coronatine-insensitive protein 1, putative, expressed -
8 Sobic.004G053300 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
9 Sobic.003G092700 xylosyltransferase, putative, expressed -
10 Sobic.008G013300 expressed protein -
11 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
12 Sobic.004G004600 IQ calmodulin-binding motif family protein, putative, expressed -
13 Sobic.006G112100 expressed protein -
14 Sobic.003G353400 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
15 Sobic.004G031800 expressed protein -
16 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
17 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.002G148300 - -
19 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
20 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -


Gene co-expression network
sample Sobic009G082600 Sobic009G082600 Sobic002G039200 Sobic002G039200 Sobic009G082600--Sobic002G039200 Sobic010G033300 Sobic010G033300 Sobic009G082600--Sobic010G033300 Sobic001G119700 Sobic001G119700 Sobic009G082600--Sobic001G119700 Sobic001G382400 Sobic001G382400 Sobic009G082600--Sobic001G382400 Sobic003G319000 Sobic003G319000 Sobic009G082600--Sobic003G319000 Sobic002G272600 Sobic002G272600 Sobic009G082600--Sobic002G272600 Sobic004G305400 Sobic004G305400 Sobic009G082600--Sobic004G305400 Sobic004G053300 Sobic004G053300 Sobic009G082600--Sobic004G053300 Sobic003G092700 Sobic003G092700 Sobic009G082600--Sobic003G092700 Sobic002G039200--Sobic009G082600 Sobic001G088900 Sobic001G088900 Sobic002G039200--Sobic001G088900 Sobic002G327000 Sobic002G327000 Sobic002G039200--Sobic002G327000 Sobic002G039200--Sobic004G305400 Sobic008G013300 Sobic008G013300 Sobic002G039200--Sobic008G013300 Sobic001G034500 Sobic001G034500 Sobic002G039200--Sobic001G034500 Sobic006G137700 Sobic006G137700 Sobic002G039200--Sobic006G137700 Sobic010G186500 Sobic010G186500 Sobic002G039200--Sobic010G186500 Sobic008G015200 Sobic008G015200 Sobic002G039200--Sobic008G015200 Sobic010G033300--Sobic009G082600 Sobic010G150200 Sobic010G150200 Sobic010G033300--Sobic010G150200 Sobic007G211300 Sobic007G211300 Sobic010G033300--Sobic007G211300 Sobic003G223900 Sobic003G223900 Sobic010G033300--Sobic003G223900 Sobic002G257900 Sobic002G257900 Sobic010G033300--Sobic002G257900 Sobic010G033300--Sobic001G119700 Sobic004G234300 Sobic004G234300 Sobic010G033300--Sobic004G234300 Sobic003G410700 Sobic003G410700 Sobic010G033300--Sobic003G410700 Sobic002G267800 Sobic002G267800 Sobic010G033300--Sobic002G267800 Sobic002G148300 Sobic002G148300 Sobic001G119700--Sobic002G148300 Sobic001G503400 Sobic001G503400 Sobic001G119700--Sobic001G503400 Sobic003G247900 Sobic003G247900 Sobic001G119700--Sobic003G247900 Sobic008G111700 Sobic008G111700 Sobic001G119700--Sobic008G111700 Sobic001G119700--Sobic009G082600 Sobic001G448200 Sobic001G448200 Sobic001G119700--Sobic001G448200 Sobic005G010500 Sobic005G010500 Sobic001G119700--Sobic005G010500 Sobic001G119700--Sobic002G272600 Sobic001G349400 Sobic001G349400 Sobic001G119700--Sobic001G349400 Sobic003G240100 Sobic003G240100 Sobic001G382400--Sobic003G240100 Sobic002G345800 Sobic002G345800 Sobic001G382400--Sobic002G345800 Sobic001G116600 Sobic001G116600 Sobic001G382400--Sobic001G116600 Sobic007G125700 Sobic007G125700 Sobic001G382400--Sobic007G125700 Sobic007G219200 Sobic007G219200 Sobic001G382400--Sobic007G219200 Sobic004G207000 Sobic004G207000 Sobic001G382400--Sobic004G207000 Sobic001G382400--Sobic009G082600 Sobic001G123100 Sobic001G123100 Sobic001G382400--Sobic001G123100 Sobic001G382400--Sobic003G410700 Sobic001G196100 Sobic001G196100 Sobic003G319000--Sobic001G196100 Sobic003G319000--Sobic003G092700 Sobic009G182200 Sobic009G182200 Sobic003G319000--Sobic009G182200 Sobic001G026600 Sobic001G026600 Sobic003G319000--Sobic001G026600 Sobic003G252900 Sobic003G252900 Sobic003G319000--Sobic003G252900 Sobic003G312400 Sobic003G312400 Sobic003G319000--Sobic003G312400 Sobic001G418000 Sobic001G418000 Sobic003G319000--Sobic001G418000 Sobic003G410400 Sobic003G410400 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic003G038600 Sobic003G038600 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic010G219100 Sobic010G219100 Sobic002G272600--Sobic010G219100 Sobic001G335900 Sobic001G335900 Sobic004G305400--Sobic001G335900 Sobic002G366900 Sobic002G366900 Sobic004G305400--Sobic002G366900 Sobic010G017800 Sobic010G017800 Sobic004G305400--Sobic010G017800 Sobic002G218700 Sobic002G218700 Sobic004G305400--Sobic002G218700 Sobic009G226400 Sobic009G226400 Sobic004G305400--Sobic009G226400 Sobic006G091000 Sobic006G091000 Sobic004G305400--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic004G305400--Sobic004G347100 Sobic005G059400 Sobic005G059400 Sobic004G305400--Sobic005G059400 Sobic004G305400--Sobic002G039200 Sobic003G277900 Sobic003G277900 Sobic004G053300--Sobic003G277900 Sobic008G000800 Sobic008G000800 Sobic004G053300--Sobic008G000800 Sobic005G159600 Sobic005G159600 Sobic004G053300--Sobic005G159600 Sobic008G099500 Sobic008G099500 Sobic004G053300--Sobic008G099500 Sobic001G494100 Sobic001G494100 Sobic004G053300--Sobic001G494100 Sobic003G445900 Sobic003G445900 Sobic004G053300--Sobic003G445900 Sobic004G227500 Sobic004G227500 Sobic004G053300--Sobic004G227500 Sobic004G054200 Sobic004G054200 Sobic004G053300--Sobic004G054200 Sobic008G086200 Sobic008G086200 Sobic004G053300--Sobic008G086200 Sobic003G092700--Sobic003G319000 Sobic003G092700--Sobic003G312400 Sobic002G141700 Sobic002G141700 Sobic003G092700--Sobic002G141700 Sobic001G145500 Sobic001G145500 Sobic003G092700--Sobic001G145500 Sobic001G542900 Sobic001G542900 Sobic003G092700--Sobic001G542900 Sobic004G083000 Sobic004G083000 Sobic003G092700--Sobic004G083000 Sobic006G252200 Sobic006G252200 Sobic003G092700--Sobic006G252200 Sobic010G088300 Sobic010G088300 Sobic003G092700--Sobic010G088300 Sobic002G194800 Sobic002G194800 Sobic003G092700--Sobic002G194800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.