Gene annotation
Transcriptome id Sobic.002G039200.1
Synonym UBP8, Sb02g003380
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1W0W265
Pfam PF13423
Panther DB PTHR24006 PTHR24006:SF520
NCBI CDD KOG1870; Ubiquitin C-terminal hydrolase
KEGG Orthology K11835; USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22030 : ubiquitin-specific protease 8
RAP-DB (Rice) LOC_Os07g06610.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045053
Brachypodium KQK20844
Barley HORVU2Hr1G059750.10 , HORVU2Hr1G059750.12 , HORVU2Hr1G059750.13 , HORVU2Hr1G059750.6 , HORVU2Hr1G059750.7 , HORVU2Hr1G059750.4 , HORVU2Hr1G059750.5 , HORVU2Hr1G059750.2 , HORVU2Hr1G059750.3 , HORVU2Hr1G059750.1 , HORVU2Hr1G059750.8 , HORVU2Hr1G059750.9
Wheat TraesCS2A02G248500 , TraesCS2B02G268700 , TraesCS2D02G250200
Populus -


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cDNA sequences
Sobic.002G039200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G082600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
2 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
3 Sobic.002G327000 villin protein, putative, expressed -
4 Sobic.004G305400 coronatine-insensitive protein 1, putative, expressed -
5 Sobic.008G013300 expressed protein -
6 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
7 Sobic.006G137700 Spc97 / Spc98 family protein, putative, expressed K16569: TUBGCP2, gamma-tubulin complex component 2
8 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
9 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
10 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
11 Sobic.003G092700 xylosyltransferase, putative, expressed -
12 Sobic.009G200500 Homeobox domain containing protein, expressed -
13 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
14 Sobic.006G179300 OsFBX64 - F-box domain containing protein, expressed -
15 Sobic.007G219200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
17 Sobic.007G051700 lissencephaly type-1-like homology motif, putative, expressed -
18 Sobic.007G211300 OTU-like cysteine protease family protein, putative, expressed -
19 Sobic.007G075100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
20 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -


Gene co-expression network
sample Sobic002G039200 Sobic002G039200 Sobic009G082600 Sobic009G082600 Sobic002G039200--Sobic009G082600 Sobic001G088900 Sobic001G088900 Sobic002G039200--Sobic001G088900 Sobic002G327000 Sobic002G327000 Sobic002G039200--Sobic002G327000 Sobic004G305400 Sobic004G305400 Sobic002G039200--Sobic004G305400 Sobic008G013300 Sobic008G013300 Sobic002G039200--Sobic008G013300 Sobic001G034500 Sobic001G034500 Sobic002G039200--Sobic001G034500 Sobic006G137700 Sobic006G137700 Sobic002G039200--Sobic006G137700 Sobic010G186500 Sobic010G186500 Sobic002G039200--Sobic010G186500 Sobic008G015200 Sobic008G015200 Sobic002G039200--Sobic008G015200 Sobic009G082600--Sobic002G039200 Sobic010G033300 Sobic010G033300 Sobic009G082600--Sobic010G033300 Sobic001G119700 Sobic001G119700 Sobic009G082600--Sobic001G119700 Sobic001G382400 Sobic001G382400 Sobic009G082600--Sobic001G382400 Sobic003G319000 Sobic003G319000 Sobic009G082600--Sobic003G319000 Sobic002G272600 Sobic002G272600 Sobic009G082600--Sobic002G272600 Sobic009G082600--Sobic004G305400 Sobic004G053300 Sobic004G053300 Sobic009G082600--Sobic004G053300 Sobic003G092700 Sobic003G092700 Sobic009G082600--Sobic003G092700 Sobic010G279900 Sobic010G279900 Sobic001G088900--Sobic010G279900 Sobic001G245900 Sobic001G245900 Sobic001G088900--Sobic001G245900 Sobic001G367100 Sobic001G367100 Sobic001G088900--Sobic001G367100 Sobic006G180700 Sobic006G180700 Sobic001G088900--Sobic006G180700 Sobic009G000400 Sobic009G000400 Sobic001G088900--Sobic009G000400 Sobic001G088900--Sobic001G034500 Sobic010G269300 Sobic010G269300 Sobic001G088900--Sobic010G269300 Sobic001G222000 Sobic001G222000 Sobic001G088900--Sobic001G222000 Sobic001G261585 Sobic001G261585 Sobic001G088900--Sobic001G261585 Sobic004G344901 Sobic004G344901 Sobic002G327000--Sobic004G344901 Sobic003G144300 Sobic003G144300 Sobic002G327000--Sobic003G144300 Sobic009G105900 Sobic009G105900 Sobic002G327000--Sobic009G105900 Sobic008G124800 Sobic008G124800 Sobic002G327000--Sobic008G124800 Sobic001G426600 Sobic001G426600 Sobic002G327000--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic002G327000--Sobic003G227100 Sobic003G337300 Sobic003G337300 Sobic002G327000--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic002G327000--Sobic001G163400 Sobic001G051700 Sobic001G051700 Sobic002G327000--Sobic001G051700 Sobic001G335900 Sobic001G335900 Sobic004G305400--Sobic001G335900 Sobic002G366900 Sobic002G366900 Sobic004G305400--Sobic002G366900 Sobic010G017800 Sobic010G017800 Sobic004G305400--Sobic010G017800 Sobic002G218700 Sobic002G218700 Sobic004G305400--Sobic002G218700 Sobic009G226400 Sobic009G226400 Sobic004G305400--Sobic009G226400 Sobic006G091000 Sobic006G091000 Sobic004G305400--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic004G305400--Sobic004G347100 Sobic005G059400 Sobic005G059400 Sobic004G305400--Sobic005G059400 Sobic004G305400--Sobic002G039200 Sobic002G297600 Sobic002G297600 Sobic008G013300--Sobic002G297600 Sobic001G115500 Sobic001G115500 Sobic008G013300--Sobic001G115500 Sobic003G361400 Sobic003G361400 Sobic008G013300--Sobic003G361400 Sobic002G318600 Sobic002G318600 Sobic008G013300--Sobic002G318600 Sobic007G010900 Sobic007G010900 Sobic008G013300--Sobic007G010900 Sobic009G073400 Sobic009G073400 Sobic008G013300--Sobic009G073400 Sobic003G259600 Sobic003G259600 Sobic008G013300--Sobic003G259600 Sobic002G264300 Sobic002G264300 Sobic008G013300--Sobic002G264300 Sobic008G040700 Sobic008G040700 Sobic008G013300--Sobic008G040700 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900 Sobic001G488100 Sobic001G488100 Sobic006G137700--Sobic001G488100 Sobic004G315500 Sobic004G315500 Sobic006G137700--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic006G137700--Sobic005G010900 Sobic006G137700--Sobic002G327000 Sobic010G114900 Sobic010G114900 Sobic006G137700--Sobic010G114900 Sobic004G149700 Sobic004G149700 Sobic006G137700--Sobic004G149700 Sobic009G134900 Sobic009G134900 Sobic006G137700--Sobic009G134900 Sobic001G373000 Sobic001G373000 Sobic006G137700--Sobic001G373000 Sobic007G051700 Sobic007G051700 Sobic006G137700--Sobic007G051700 Sobic010G186500--Sobic003G319000 Sobic002G418100 Sobic002G418100 Sobic010G186500--Sobic002G418100 Sobic003G009200 Sobic003G009200 Sobic010G186500--Sobic003G009200 Sobic007G051400 Sobic007G051400 Sobic010G186500--Sobic007G051400 Sobic003G312400 Sobic003G312400 Sobic010G186500--Sobic003G312400 Sobic006G189200 Sobic006G189200 Sobic010G186500--Sobic006G189200 Sobic002G260700 Sobic002G260700 Sobic010G186500--Sobic002G260700 Sobic001G026600 Sobic001G026600 Sobic010G186500--Sobic001G026600 Sobic004G331900 Sobic004G331900 Sobic010G186500--Sobic004G331900 Sobic001G385400 Sobic001G385400 Sobic008G015200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic008G015200--Sobic008G192700 Sobic002G374400 Sobic002G374400 Sobic008G015200--Sobic002G374400 Sobic002G074000 Sobic002G074000 Sobic008G015200--Sobic002G074000 Sobic009G052100 Sobic009G052100 Sobic008G015200--Sobic009G052100 Sobic009G167100 Sobic009G167100 Sobic008G015200--Sobic009G167100 Sobic006G179300 Sobic006G179300 Sobic008G015200--Sobic006G179300 Sobic002G143200 Sobic002G143200 Sobic008G015200--Sobic002G143200 Sobic009G049200 Sobic009G049200 Sobic008G015200--Sobic009G049200
Octagon: transcription factors


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