Gene annotation
Transcriptome id Sobic.004G305400.1,Sobic.004G305400.2
Synonym Sb04g033850
Functional annotation coronatine-insensitive protein 1, putative, expressed
UniProt C5XSR6
Pfam -
Panther DB PTHR24006 PTHR24006:SF430
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24390 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os02g52230.1 : coronatine-insensitive protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a033124 , Zm00025a022178
Brachypodium KQK01802 , KQK01801
Barley HORVU4Hr1G080360.1 , HORVU4Hr1G015730.1 , HORVU4Hr1G080360.3 , HORVU4Hr1G080360.2 , HORVU6Hr1G077570.4 , HORVU6Hr1G077570.3 , HORVU6Hr1G077570.1 , HORVU4Hr1G015730.2
Wheat TraesCS7B02G081200 , TraesCS7D02G177500 , TraesCS6A02G315300 , TraesCS7A02G176200 , TraesCS6B02G345800 , TraesCS6D02G294600
Populus -


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cDNA sequences
Sobic.004G305400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
2 Sobic.002G366900 receptor-like protein kinase precursor, putative, expressed -
3 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
4 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
5 Sobic.009G226400 dynamin family protein, putative, expressed -
6 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
7 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
8 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
9 Sobic.002G039200 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
10 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
11 Sobic.004G358900 Sec1 family transport protein, putative, expressed -
12 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
13 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
14 Sobic.001G499000 BTBP1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with pentapeptide repeats, expressed -
15 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
16 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
17 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
18 Sobic.009G082600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
19 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
20 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1


Gene co-expression network
sample Sobic004G305400 Sobic004G305400 Sobic001G335900 Sobic001G335900 Sobic004G305400--Sobic001G335900 Sobic002G366900 Sobic002G366900 Sobic004G305400--Sobic002G366900 Sobic010G017800 Sobic010G017800 Sobic004G305400--Sobic010G017800 Sobic002G218700 Sobic002G218700 Sobic004G305400--Sobic002G218700 Sobic009G226400 Sobic009G226400 Sobic004G305400--Sobic009G226400 Sobic006G091000 Sobic006G091000 Sobic004G305400--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic004G305400--Sobic004G347100 Sobic005G059400 Sobic005G059400 Sobic004G305400--Sobic005G059400 Sobic002G039200 Sobic002G039200 Sobic004G305400--Sobic002G039200 Sobic001G369000 Sobic001G369000 Sobic001G335900--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic003G240700 Sobic003G240700 Sobic001G335900--Sobic003G240700 Sobic009G229600 Sobic009G229600 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic002G366900--Sobic004G305400 Sobic001G499000 Sobic001G499000 Sobic002G366900--Sobic001G499000 Sobic002G202400 Sobic002G202400 Sobic002G366900--Sobic002G202400 Sobic004G013600 Sobic004G013600 Sobic002G366900--Sobic004G013600 Sobic002G272600 Sobic002G272600 Sobic002G366900--Sobic002G272600 Sobic006G278700 Sobic006G278700 Sobic002G366900--Sobic006G278700 Sobic006G252700 Sobic006G252700 Sobic002G366900--Sobic006G252700 Sobic010G211300 Sobic010G211300 Sobic002G366900--Sobic010G211300 Sobic007G202600 Sobic007G202600 Sobic002G366900--Sobic007G202600 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic010G017800--Sobic001G335900 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic010G017800--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic010G017800--Sobic001G371200 Sobic003G340900 Sobic003G340900 Sobic010G017800--Sobic003G340900 Sobic003G347300 Sobic003G347300 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic009G030300 Sobic009G030300 Sobic002G218700--Sobic009G030300 Sobic010G256000 Sobic010G256000 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic004G227500 Sobic004G227500 Sobic002G218700--Sobic004G227500 Sobic009G253400 Sobic009G253400 Sobic002G218700--Sobic009G253400 Sobic004G225700 Sobic004G225700 Sobic002G218700--Sobic004G225700 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 Sobic009G226400--SobicK004100 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic009G226400--Sobic001G335900 Sobic006G056200 Sobic006G056200 Sobic009G226400--Sobic006G056200 Sobic004G039600 Sobic004G039600 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic009G040800 Sobic009G040800 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic005G040900 Sobic005G040900 Sobic006G091000--Sobic005G040900 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic004G347100--Sobic007G139400 Sobic006G248500 Sobic006G248500 Sobic004G347100--Sobic006G248500 Sobic004G347100--Sobic006G091000 Sobic009G044900 Sobic009G044900 Sobic004G347100--Sobic009G044900 Sobic004G347100--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic004G347100--Sobic009G129600 Sobic009G151200 Sobic009G151200 Sobic004G347100--Sobic009G151200 Sobic004G347100--Sobic009G040800 Sobic003G336800 Sobic003G336800 Sobic004G347100--Sobic003G336800 Sobic001G334100 Sobic001G334100 Sobic005G059400--Sobic001G334100 Sobic003G259600 Sobic003G259600 Sobic005G059400--Sobic003G259600 Sobic005G059400--Sobic002G218700 Sobic001G347100 Sobic001G347100 Sobic005G059400--Sobic001G347100 Sobic006G180700 Sobic006G180700 Sobic005G059400--Sobic006G180700 Sobic005G199200 Sobic005G199200 Sobic005G059400--Sobic005G199200 Sobic004G036700 Sobic004G036700 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic003G184400 Sobic003G184400 Sobic005G059400--Sobic003G184400 Sobic009G082600 Sobic009G082600 Sobic002G039200--Sobic009G082600 Sobic001G088900 Sobic001G088900 Sobic002G039200--Sobic001G088900 Sobic002G327000 Sobic002G327000 Sobic002G039200--Sobic002G327000 Sobic002G039200--Sobic004G305400 Sobic008G013300 Sobic008G013300 Sobic002G039200--Sobic008G013300 Sobic001G034500 Sobic001G034500 Sobic002G039200--Sobic001G034500 Sobic006G137700 Sobic006G137700 Sobic002G039200--Sobic006G137700 Sobic010G186500 Sobic010G186500 Sobic002G039200--Sobic010G186500 Sobic008G015200 Sobic008G015200 Sobic002G039200--Sobic008G015200
Octagon: transcription factors


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