Gene annotation
Transcriptome id Sobic.004G053300.1
Synonym TUB8, Sb04g004520
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt C5XVI8
Pfam PF03953 PF00091
Panther DB PTHR11588 PTHR11588:SF117
NCBI CDD -
KEGG Orthology K07375; tubulin beta
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT5G23860 : tubulin beta 8
RAP-DB (Rice) LOC_Os06g46000.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000132 , Zm00025a037439 , Zm00025a039825 , Zm00025a008433 , Zm00025a008427 , Zm00025a051791 , Zm00025a041941 , Zm00025a016660 , Zm00025a035181 , Zm00025a008163 , Zm00025a024200 , Zm00025a007533 , Zm00025a017188 , Zm00025a027156 , Zm00025a019054 , Zm00025a040093
Brachypodium KQJ93503 , KQK12908 , KQK17085 , KQK13880 , KQK24113 , KQK06257 , KQK03976 , KQK05638
Barley HORVU3Hr1G078940.3 , HORVU3Hr1G078940.2 , HORVU3Hr1G078940.1 , HORVU3Hr1G078940.7 , HORVU3Hr1G078940.6 , HORVU3Hr1G078940.5 , HORVU3Hr1G078940.4 , HORVU1Hr1G068170.1 , HORVU1Hr1G068170.3 , HORVU1Hr1G068170.2 , HORVU0Hr1G026030.4 , HORVU0Hr1G026030.3 , HORVU0Hr1G026030.2 , HORVU7Hr1G059990.1 , HORVU1Hr1G064870.4 , HORVU1Hr1G064870.5 , HORVU1Hr1G064870.6 , HORVU1Hr1G064870.7 , HORVU1Hr1G064870.1 , HORVU1Hr1G064870.2 , HORVU1Hr1G064870.3 , HORVU1Hr1G064870.8 , HORVU1Hr1G064870.9 , HORVU4Hr1G087740.1 , HORVU4Hr1G087740.3 , HORVU4Hr1G087740.4 , HORVU4Hr1G002530.1 , HORVU4Hr1G002530.2 , HORVU4Hr1G002530.3 , HORVU4Hr1G002530.4 , HORVU4Hr1G002530.5 , HORVU4Hr1G002530.6 , HORVU4Hr1G087740.5 , HORVU4Hr1G087740.2 , HORVU5Hr1G100900.1 , HORVU5Hr1G100900.3 , HORVU5Hr1G100900.2 , HORVU5Hr1G100900.5 , HORVU5Hr1G100900.4 , HORVU5Hr1G100900.6 , HORVU7Hr1G107100.4 , HORVU7Hr1G107100.5 , HORVU7Hr1G107100.2 , HORVU7Hr1G107100.3 , HORVU7Hr1G107100.1 , HORVU4Hr1G002530.7 , HORVU6Hr1G027620.5 , HORVU6Hr1G027620.4 , HORVU6Hr1G027620.3 , HORVU6Hr1G027620.2 , HORVU6Hr1G027620.1
Wheat TraesCS4D02G015400 , TraesCS7A02G466600 , TraesCS4B02G017100 , TraesCS3B02G363500 , TraesCS6D02G130500 , TraesCS6D02G130500 , TraesCS4A02G296600 , TraesCS1B02G320800 , TraesCS1A02G309700 , TraesCS1A02G142800 , TraesCS1A02G142800 , TraesCS1A02G142800 , TraesCS5A02G443500 , TraesCS5A02G416400 , TraesCS5A02G416400 , TraesCS1A02G142800 , TraesCS1D02G258800 , TraesCS1B02G269400 , TraesCS5D02G424100 , TraesCS1A02G437700 , TraesCS1A02G437700 , TraesCS6B02G169300 , TraesCS6B02G169300 , TraesCS4B02G366500 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS5B02G418700 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G534300 , TraesCS5A02G069800 , TraesCS3D02G326900 , TraesCSU02G137900 , TraesCS1A02G258800 , TraesCS1A02G101000 , TraesCS1A02G101000 , TraesCS1D02G309200 , TraesCS7D02G454200 , TraesCS2A02G437800
Populus PNT56452 , PNS97627 , PNT53791 , PNT45252 , PNT45227


JBrowse

Open New Page


cDNA sequences
Sobic.004G053300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
2 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
3 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -
4 Sobic.008G099500 - -
5 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
6 Sobic.003G445900 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
7 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
8 Sobic.004G054200 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
9 Sobic.008G086200 expressed protein -
10 Sobic.009G123500 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed -
11 Sobic.003G347300 TBC domain containing protein, expressed -
12 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
14 Sobic.001G352600 expressed protein -
15 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
16 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
17 Sobic.004G249100 spotted leaf 11, putative, expressed -
18 Sobic.009G053400 expressed protein -
19 Sobic.009G013100 rp3 protein, putative, expressed -
20 Sobic.009G064900 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'


Gene co-expression network
sample Sobic004G053300 Sobic004G053300 Sobic003G277900 Sobic003G277900 Sobic004G053300--Sobic003G277900 Sobic008G000800 Sobic008G000800 Sobic004G053300--Sobic008G000800 Sobic005G159600 Sobic005G159600 Sobic004G053300--Sobic005G159600 Sobic008G099500 Sobic008G099500 Sobic004G053300--Sobic008G099500 Sobic001G494100 Sobic001G494100 Sobic004G053300--Sobic001G494100 Sobic003G445900 Sobic003G445900 Sobic004G053300--Sobic003G445900 Sobic004G227500 Sobic004G227500 Sobic004G053300--Sobic004G227500 Sobic004G054200 Sobic004G054200 Sobic004G053300--Sobic004G054200 Sobic008G086200 Sobic008G086200 Sobic004G053300--Sobic008G086200 Sobic003G277900--Sobic004G053300 Sobic003G277900--Sobic005G159600 Sobic003G277900--Sobic001G494100 Sobic006G046600 Sobic006G046600 Sobic003G277900--Sobic006G046600 Sobic003G277900--Sobic008G000800 Sobic003G277900--Sobic008G086200 Sobic009G123500 Sobic009G123500 Sobic003G277900--Sobic009G123500 Sobic001G315400 Sobic001G315400 Sobic003G277900--Sobic001G315400 Sobic007G187400 Sobic007G187400 Sobic003G277900--Sobic007G187400 Sobic010G229000 Sobic010G229000 Sobic008G000800--Sobic010G229000 Sobic008G000800--Sobic004G053300 Sobic010G139301 Sobic010G139301 Sobic008G000800--Sobic010G139301 Sobic006G068400 Sobic006G068400 Sobic008G000800--Sobic006G068400 Sobic003G432900 Sobic003G432900 Sobic008G000800--Sobic003G432900 Sobic009G013100 Sobic009G013100 Sobic008G000800--Sobic009G013100 Sobic008G000800--Sobic004G227500 Sobic001G305400 Sobic001G305400 Sobic008G000800--Sobic001G305400 Sobic008G000800--Sobic003G277900 Sobic005G159600--Sobic003G277900 Sobic005G159600--Sobic004G053300 Sobic004G134100 Sobic004G134100 Sobic005G159600--Sobic004G134100 Sobic005G159600--Sobic008G086200 Sobic005G159600--Sobic009G123500 Sobic002G393200 Sobic002G393200 Sobic005G159600--Sobic002G393200 Sobic004G225700 Sobic004G225700 Sobic005G159600--Sobic004G225700 Sobic009G026200 Sobic009G026200 Sobic005G159600--Sobic009G026200 Sobic002G168600 Sobic002G168600 Sobic005G159600--Sobic002G168600 Sobic008G090300 Sobic008G090300 Sobic008G099500--Sobic008G090300 Sobic005G099150 Sobic005G099150 Sobic008G099500--Sobic005G099150 Sobic006G022500 Sobic006G022500 Sobic008G099500--Sobic006G022500 Sobic005G128000 Sobic005G128000 Sobic008G099500--Sobic005G128000 Sobic008G099500--Sobic004G227500 Sobic004G289500 Sobic004G289500 Sobic008G099500--Sobic004G289500 Sobic002G334600 Sobic002G334600 Sobic008G099500--Sobic002G334600 Sobic001G116100 Sobic001G116100 Sobic008G099500--Sobic001G116100 Sobic006G066000 Sobic006G066000 Sobic008G099500--Sobic006G066000 Sobic001G494100--Sobic006G046600 Sobic008G169400 Sobic008G169400 Sobic001G494100--Sobic008G169400 Sobic005G204100 Sobic005G204100 Sobic001G494100--Sobic005G204100 Sobic001G494100--Sobic004G227500 Sobic001G494100--Sobic003G277900 Sobic006G262100 Sobic006G262100 Sobic001G494100--Sobic006G262100 Sobic002G216600 Sobic002G216600 Sobic001G494100--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic001G494100--Sobic004G199700 Sobic001G494100--Sobic001G315400 Sobic003G445900--Sobic008G000800 Sobic003G445900--Sobic004G053300 Sobic002G313500 Sobic002G313500 Sobic003G445900--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic003G445900--Sobic010G017800 Sobic007G191100 Sobic007G191100 Sobic003G445900--Sobic007G191100 Sobic003G445900--Sobic003G432900 Sobic002G288000 Sobic002G288000 Sobic003G445900--Sobic002G288000 Sobic008G139700 Sobic008G139700 Sobic003G445900--Sobic008G139700 Sobic003G346000 Sobic003G346000 Sobic003G445900--Sobic003G346000 Sobic004G227500--Sobic006G022500 Sobic002G316500 Sobic002G316500 Sobic004G227500--Sobic002G316500 Sobic010G046400 Sobic010G046400 Sobic004G227500--Sobic010G046400 Sobic004G227500--Sobic001G494100 Sobic004G135500 Sobic004G135500 Sobic004G227500--Sobic004G135500 Sobic010G173900 Sobic010G173900 Sobic004G227500--Sobic010G173900 Sobic004G227500--Sobic001G315400 Sobic001G367100 Sobic001G367100 Sobic004G227500--Sobic001G367100 Sobic004G227500--Sobic002G334600 Sobic004G054200--Sobic008G000800 Sobic004G054200--Sobic010G229000 Sobic004G054200--Sobic003G432900 Sobic004G054200--Sobic004G053300 Sobic004G054200--Sobic008G086200 Sobic004G054200--Sobic003G277900 Sobic004G054200--Sobic003G445900 Sobic003G347300 Sobic003G347300 Sobic004G054200--Sobic003G347300 Sobic001G537300 Sobic001G537300 Sobic004G054200--Sobic001G537300 Sobic008G086200--Sobic004G225700 Sobic009G175200 Sobic009G175200 Sobic008G086200--Sobic009G175200 Sobic003G174900 Sobic003G174900 Sobic008G086200--Sobic003G174900 Sobic003G375000 Sobic003G375000 Sobic008G086200--Sobic003G375000 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.