Gene annotation
Transcriptome id Sobic.004G249100.1
Synonym Sb04g028890
Functional annotation spotted leaf 11, putative, expressed
UniProt C5XZC1
Pfam PF04564 PF00514
Panther DB PTHR23315 PTHR23315:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G71020 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os02g49950.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a032654
Brachypodium KQK01598 , KQK01597
Barley HORVU5Hr1G113230.1 , HORVU6Hr1G073280.4 , HORVU6Hr1G073280.1 , HORVU6Hr1G073280.2 , HORVU6Hr1G073280.3
Wheat TraesCS4B02G206900 , TraesCS6B02G324000 , TraesCS6D02G274500 , TraesCS4A02G097700 , TraesCS6A02G293600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G204700 polygalacturonase, putative, expressed -
2 Sobic.004G053300 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
3 Sobic.003G410600 exostosin family domain containing protein, expressed -
4 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
5 Sobic.004G286700 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -
7 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
9 Sobic.009G167800 protein kinase family protein, putative, expressed -
10 Sobic.010G095100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
11 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
12 Sobic.007G207600 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
13 Sobic.003G237800 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
15 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
16 Sobic.002G260700 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
17 Sobic.007G196000 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
18 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
19 Sobic.010G054100 SHR5-receptor-like kinase, putative, expressed -
20 Sobic.008G148500 expressed protein -


Gene co-expression network
sample Sobic004G249100 Sobic004G249100 Sobic005G204700 Sobic005G204700 Sobic004G249100--Sobic005G204700 Sobic004G053300 Sobic004G053300 Sobic004G249100--Sobic004G053300 Sobic003G410600 Sobic003G410600 Sobic004G249100--Sobic003G410600 Sobic003G277900 Sobic003G277900 Sobic004G249100--Sobic003G277900 Sobic004G286700 Sobic004G286700 Sobic004G249100--Sobic004G286700 Sobic005G159600 Sobic005G159600 Sobic004G249100--Sobic005G159600 Sobic002G393200 Sobic002G393200 Sobic004G249100--Sobic002G393200 Sobic010G042600 Sobic010G042600 Sobic004G249100--Sobic010G042600 Sobic009G167800 Sobic009G167800 Sobic004G249100--Sobic009G167800 Sobic006G267500 Sobic006G267500 Sobic005G204700--Sobic006G267500 Sobic005G204700--Sobic002G393200 Sobic009G206500 Sobic009G206500 Sobic005G204700--Sobic009G206500 Sobic005G204700--Sobic004G249100 Sobic001G116000 Sobic001G116000 Sobic005G204700--Sobic001G116000 Sobic010G090500 Sobic010G090500 Sobic005G204700--Sobic010G090500 Sobic004G051300 Sobic004G051300 Sobic005G204700--Sobic004G051300 Sobic005G204700--Sobic010G042600 Sobic003G151300 Sobic003G151300 Sobic005G204700--Sobic003G151300 Sobic004G053300--Sobic003G277900 Sobic008G000800 Sobic008G000800 Sobic004G053300--Sobic008G000800 Sobic004G053300--Sobic005G159600 Sobic008G099500 Sobic008G099500 Sobic004G053300--Sobic008G099500 Sobic001G494100 Sobic001G494100 Sobic004G053300--Sobic001G494100 Sobic003G445900 Sobic003G445900 Sobic004G053300--Sobic003G445900 Sobic004G227500 Sobic004G227500 Sobic004G053300--Sobic004G227500 Sobic004G054200 Sobic004G054200 Sobic004G053300--Sobic004G054200 Sobic008G086200 Sobic008G086200 Sobic004G053300--Sobic008G086200 Sobic003G294500 Sobic003G294500 Sobic003G410600--Sobic003G294500 Sobic003G013000 Sobic003G013000 Sobic003G410600--Sobic003G013000 Sobic005G144600 Sobic005G144600 Sobic003G410600--Sobic005G144600 Sobic001G177900 Sobic001G177900 Sobic003G410600--Sobic001G177900 Sobic003G135400 Sobic003G135400 Sobic003G410600--Sobic003G135400 Sobic003G314900 Sobic003G314900 Sobic003G410600--Sobic003G314900 Sobic007G168900 Sobic007G168900 Sobic003G410600--Sobic007G168900 Sobic010G008900 Sobic010G008900 Sobic003G410600--Sobic010G008900 Sobic001G029800 Sobic001G029800 Sobic003G410600--Sobic001G029800 Sobic003G277900--Sobic004G053300 Sobic003G277900--Sobic005G159600 Sobic003G277900--Sobic001G494100 Sobic006G046600 Sobic006G046600 Sobic003G277900--Sobic006G046600 Sobic003G277900--Sobic008G000800 Sobic003G277900--Sobic008G086200 Sobic009G123500 Sobic009G123500 Sobic003G277900--Sobic009G123500 Sobic001G315400 Sobic001G315400 Sobic003G277900--Sobic001G315400 Sobic007G187400 Sobic007G187400 Sobic003G277900--Sobic007G187400 Sobic003G420100 Sobic003G420100 Sobic004G286700--Sobic003G420100 Sobic001G468500 Sobic001G468500 Sobic004G286700--Sobic001G468500 Sobic004G286700--Sobic003G410600 Sobic007G113300 Sobic007G113300 Sobic004G286700--Sobic007G113300 Sobic007G094400 Sobic007G094400 Sobic004G286700--Sobic007G094400 Sobic003G017500 Sobic003G017500 Sobic004G286700--Sobic003G017500 Sobic004G233700 Sobic004G233700 Sobic004G286700--Sobic004G233700 Sobic009G242501 Sobic009G242501 Sobic004G286700--Sobic009G242501 Sobic009G021700 Sobic009G021700 Sobic004G286700--Sobic009G021700 Sobic005G159600--Sobic003G277900 Sobic005G159600--Sobic004G053300 Sobic004G134100 Sobic004G134100 Sobic005G159600--Sobic004G134100 Sobic005G159600--Sobic008G086200 Sobic005G159600--Sobic009G123500 Sobic005G159600--Sobic002G393200 Sobic004G225700 Sobic004G225700 Sobic005G159600--Sobic004G225700 Sobic009G026200 Sobic009G026200 Sobic005G159600--Sobic009G026200 Sobic002G168600 Sobic002G168600 Sobic005G159600--Sobic002G168600 Sobic008G148500 Sobic008G148500 Sobic002G393200--Sobic008G148500 Sobic006G254500 Sobic006G254500 Sobic002G393200--Sobic006G254500 Sobic002G393200--Sobic005G204700 Sobic004G152200 Sobic004G152200 Sobic002G393200--Sobic004G152200 Sobic002G161700 Sobic002G161700 Sobic002G393200--Sobic002G161700 Sobic003G131200 Sobic003G131200 Sobic002G393200--Sobic003G131200 Sobic002G393200--Sobic009G206500 Sobic002G143200 Sobic002G143200 Sobic002G393200--Sobic002G143200 Sobic002G393200--Sobic006G267500 Sobic003G118100 Sobic003G118100 Sobic010G042600--Sobic003G118100 Sobic010G042600--Sobic009G206500 Sobic001G144200 Sobic001G144200 Sobic010G042600--Sobic001G144200 Sobic010G042600--Sobic006G267500 Sobic003G266400 Sobic003G266400 Sobic010G042600--Sobic003G266400 Sobic010G018500 Sobic010G018500 Sobic010G042600--Sobic010G018500 Sobic001G196000 Sobic001G196000 Sobic010G042600--Sobic001G196000 Sobic006G035600 Sobic006G035600 Sobic010G042600--Sobic006G035600 Sobic001G500400 Sobic001G500400 Sobic010G042600--Sobic001G500400 Sobic008G191500 Sobic008G191500 Sobic009G167800--Sobic008G191500 Sobic010G054100 Sobic010G054100 Sobic009G167800--Sobic010G054100 Sobic001G159800 Sobic001G159800 Sobic009G167800--Sobic001G159800 Sobic010G216000 Sobic010G216000 Sobic009G167800--Sobic010G216000 Sobic007G114500 Sobic007G114500 Sobic009G167800--Sobic007G114500 Sobic009G167800--Sobic003G017500 Sobic004G270800 Sobic004G270800 Sobic009G167800--Sobic004G270800 Sobic009G167800--Sobic004G249100 Sobic009G063400 Sobic009G063400 Sobic009G167800--Sobic009G063400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.