Gene annotation
Transcriptome id Sobic.005G204700.1
Synonym Sb05g025980
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6PTQ9
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16850 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os11g43750.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a029190
Brachypodium KQJ87434 , KQJ87435
Barley HORVU5Hr1G023800.8 , HORVU5Hr1G023800.4 , HORVU5Hr1G023800.5 , HORVU5Hr1G023800.6 , HORVU5Hr1G023800.7 , HORVU5Hr1G023800.1 , HORVU5Hr1G023800.2 , HORVU5Hr1G023800.3
Wheat TraesCS5A02G090800 , TraesCS5A02G090800 , TraesCS4D02G146700 , TraesCS4D02G146700 , TraesCS5D02G102900 , TraesCS4B02G144700 , TraesCS4B02G144700 , TraesCS5B02G097100 , TraesCS5B02G097100 , TraesCS4A02G168800 , TraesCS4A02G168800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G204700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G267500 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
2 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
4 Sobic.004G249100 spotted leaf 11, putative, expressed -
5 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
6 Sobic.010G090500 expressed protein -
7 Sobic.004G051300 galactosyltransferase, putative, expressed -
8 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
9 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
10 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
11 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
13 Sobic.009G061000 DNA binding protein, putative, expressed -
14 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
15 Sobic.003G017500 TTL1, putative, expressed -
16 Sobic.001G159800 KIP1, putative, expressed -
17 Sobic.008G148500 expressed protein -
18 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
19 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
20 Sobic.001G099100 endoglucanase, putative, expressed K01179: endoglucanase


Gene co-expression network
sample Sobic005G204700 Sobic005G204700 Sobic006G267500 Sobic006G267500 Sobic005G204700--Sobic006G267500 Sobic002G393200 Sobic002G393200 Sobic005G204700--Sobic002G393200 Sobic009G206500 Sobic009G206500 Sobic005G204700--Sobic009G206500 Sobic004G249100 Sobic004G249100 Sobic005G204700--Sobic004G249100 Sobic001G116000 Sobic001G116000 Sobic005G204700--Sobic001G116000 Sobic010G090500 Sobic010G090500 Sobic005G204700--Sobic010G090500 Sobic004G051300 Sobic004G051300 Sobic005G204700--Sobic004G051300 Sobic010G042600 Sobic010G042600 Sobic005G204700--Sobic010G042600 Sobic003G151300 Sobic003G151300 Sobic005G204700--Sobic003G151300 Sobic009G061000 Sobic009G061000 Sobic006G267500--Sobic009G061000 Sobic006G267500--Sobic009G206500 Sobic009G212100 Sobic009G212100 Sobic006G267500--Sobic009G212100 Sobic006G254500 Sobic006G254500 Sobic006G267500--Sobic006G254500 Sobic001G437500 Sobic001G437500 Sobic006G267500--Sobic001G437500 Sobic004G315700 Sobic004G315700 Sobic006G267500--Sobic004G315700 Sobic006G267500--Sobic010G090500 Sobic006G267500--Sobic005G204700 Sobic001G296800 Sobic001G296800 Sobic006G267500--Sobic001G296800 Sobic008G148500 Sobic008G148500 Sobic002G393200--Sobic008G148500 Sobic002G393200--Sobic006G254500 Sobic002G393200--Sobic005G204700 Sobic004G152200 Sobic004G152200 Sobic002G393200--Sobic004G152200 Sobic002G161700 Sobic002G161700 Sobic002G393200--Sobic002G161700 Sobic003G131200 Sobic003G131200 Sobic002G393200--Sobic003G131200 Sobic002G393200--Sobic009G206500 Sobic002G143200 Sobic002G143200 Sobic002G393200--Sobic002G143200 Sobic002G393200--Sobic006G267500 Sobic007G139500 Sobic007G139500 Sobic009G206500--Sobic007G139500 Sobic010G067800 Sobic010G067800 Sobic009G206500--Sobic010G067800 Sobic009G206500--Sobic006G267500 Sobic009G206500--Sobic001G437500 Sobic001G144200 Sobic001G144200 Sobic009G206500--Sobic001G144200 Sobic007G040301 Sobic007G040301 Sobic009G206500--Sobic007G040301 Sobic002G275500 Sobic002G275500 Sobic009G206500--Sobic002G275500 Sobic009G026101 Sobic009G026101 Sobic009G206500--Sobic009G026101 Sobic001G183600 Sobic001G183600 Sobic009G206500--Sobic001G183600 Sobic004G249100--Sobic005G204700 Sobic004G053300 Sobic004G053300 Sobic004G249100--Sobic004G053300 Sobic003G410600 Sobic003G410600 Sobic004G249100--Sobic003G410600 Sobic003G277900 Sobic003G277900 Sobic004G249100--Sobic003G277900 Sobic004G286700 Sobic004G286700 Sobic004G249100--Sobic004G286700 Sobic005G159600 Sobic005G159600 Sobic004G249100--Sobic005G159600 Sobic004G249100--Sobic002G393200 Sobic004G249100--Sobic010G042600 Sobic009G167800 Sobic009G167800 Sobic004G249100--Sobic009G167800 Sobic001G196100 Sobic001G196100 Sobic001G116000--Sobic001G196100 Sobic001G035400 Sobic001G035400 Sobic001G116000--Sobic001G035400 Sobic007G044400 Sobic007G044400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic001G159800 Sobic001G159800 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic010G090500--Sobic001G437500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic010G090500--Sobic009G061000 Sobic009G125900 Sobic009G125900 Sobic010G090500--Sobic009G125900 Sobic001G099100 Sobic001G099100 Sobic004G051300--Sobic001G099100 Sobic002G118700 Sobic002G118700 Sobic004G051300--Sobic002G118700 Sobic004G051300--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic004G051300--Sobic002G075500 Sobic004G051300--Sobic009G026101 Sobic002G276600 Sobic002G276600 Sobic004G051300--Sobic002G276600 Sobic004G051300--Sobic009G079100 Sobic004G051300--Sobic010G090500 Sobic009G063400 Sobic009G063400 Sobic004G051300--Sobic009G063400 Sobic003G118100 Sobic003G118100 Sobic010G042600--Sobic003G118100 Sobic010G042600--Sobic009G206500 Sobic010G042600--Sobic001G144200 Sobic010G042600--Sobic006G267500 Sobic003G266400 Sobic003G266400 Sobic010G042600--Sobic003G266400 Sobic010G018500 Sobic010G018500 Sobic010G042600--Sobic010G018500 Sobic001G196000 Sobic001G196000 Sobic010G042600--Sobic001G196000 Sobic006G035600 Sobic006G035600 Sobic010G042600--Sobic006G035600 Sobic001G500400 Sobic001G500400 Sobic010G042600--Sobic001G500400 Sobic009G026200 Sobic009G026200 Sobic003G151300--Sobic009G026200 Sobic008G008400 Sobic008G008400 Sobic003G151300--Sobic008G008400 Sobic008G174800 Sobic008G174800 Sobic003G151300--Sobic008G174800 Sobic010G224900 Sobic010G224900 Sobic003G151300--Sobic010G224900 Sobic009G162500 Sobic009G162500 Sobic003G151300--Sobic009G162500 Sobic001G107200 Sobic001G107200 Sobic003G151300--Sobic001G107200 Sobic008G021900 Sobic008G021900 Sobic003G151300--Sobic008G021900 Sobic004G203900 Sobic004G203900 Sobic003G151300--Sobic004G203900 Sobic004G134100 Sobic004G134100 Sobic003G151300--Sobic004G134100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.