Gene annotation
Transcriptome id Sobic.004G265600.1
Synonym Sb04g030360
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5Y099
Pfam PF13176 PF13181 PF13424
Panther DB PTHR19959 PTHR19959:SF156
NCBI CDD KOG1840; Kinesin light chain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G27960 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g47880.2 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021746 , Zm00025a032479
Brachypodium KQK00962 , PNT69292
Barley HORVU6Hr1G069310.1
Wheat TraesCS6B02G302000 , TraesCS6A02G274500 , TraesCS6D02G254800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G125900 expressed protein -
2 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
3 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.009G026101 - -
5 Sobic.004G203900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
6 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
7 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
8 Sobic.010G090500 expressed protein -
9 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.008G178800 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
11 Sobic.005G204700 polygalacturonase, putative, expressed -
12 Sobic.001G313301 - -
13 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
14 Sobic.006G038200 receptor protein kinase, putative, expressed -
15 Sobic.001G408800 hydrolase, alpha/beta fold family protein, putative, expressed -
16 Sobic.004G319600 polygalacturonase, putative, expressed -
17 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
18 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
19 Sobic.004G051300 galactosyltransferase, putative, expressed -
20 Sobic.006G267500 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1


Gene co-expression network
sample Sobic004G265600 Sobic004G265600 Sobic009G125900 Sobic009G125900 Sobic004G265600--Sobic009G125900 Sobic001G116000 Sobic001G116000 Sobic004G265600--Sobic001G116000 Sobic009G063400 Sobic009G063400 Sobic004G265600--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic004G265600--Sobic009G026101 Sobic004G203900 Sobic004G203900 Sobic004G265600--Sobic004G203900 Sobic002G075500 Sobic002G075500 Sobic004G265600--Sobic002G075500 Sobic003G254700 Sobic003G254700 Sobic004G265600--Sobic003G254700 Sobic010G090500 Sobic010G090500 Sobic004G265600--Sobic010G090500 Sobic008G174900 Sobic008G174900 Sobic004G265600--Sobic008G174900 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic002G118700 Sobic002G118700 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic009G125900--Sobic004G265600 Sobic010G096100 Sobic010G096100 Sobic009G125900--Sobic010G096100 Sobic004G051300 Sobic004G051300 Sobic009G125900--Sobic004G051300 Sobic009G125900--Sobic003G254700 Sobic001G196100 Sobic001G196100 Sobic001G116000--Sobic001G196100 Sobic001G035400 Sobic001G035400 Sobic001G116000--Sobic001G035400 Sobic007G044400 Sobic007G044400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic009G063400--Sobic009G125900 Sobic009G063400--Sobic002G075500 Sobic009G063400--Sobic009G026101 Sobic009G063400--Sobic002G118700 Sobic009G063400--Sobic010G096100 Sobic001G334900 Sobic001G334900 Sobic009G063400--Sobic001G334900 Sobic009G063400--Sobic010G090500 Sobic001G208600 Sobic001G208600 Sobic009G063400--Sobic001G208600 Sobic006G075000 Sobic006G075000 Sobic009G063400--Sobic006G075000 Sobic001G133900 Sobic001G133900 Sobic009G026101--Sobic001G133900 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G246700 Sobic009G246700 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic009G026101--Sobic002G075500 Sobic009G026101--Sobic006G075000 Sobic009G026101--Sobic003G254700 Sobic009G026101--Sobic010G096100 Sobic003G071400 Sobic003G071400 Sobic004G203900--Sobic003G071400 Sobic004G203900--Sobic004G265600 Sobic003G151300 Sobic003G151300 Sobic004G203900--Sobic003G151300 Sobic009G032600 Sobic009G032600 Sobic004G203900--Sobic009G032600 Sobic006G038200 Sobic006G038200 Sobic004G203900--Sobic006G038200 Sobic008G000100 Sobic008G000100 Sobic004G203900--Sobic008G000100 Sobic002G347400 Sobic002G347400 Sobic004G203900--Sobic002G347400 Sobic003G098600 Sobic003G098600 Sobic004G203900--Sobic003G098600 Sobic004G168700 Sobic004G168700 Sobic004G203900--Sobic004G168700 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G075500--Sobic002G118700 Sobic002G075500--Sobic009G026101 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic007G180900 Sobic007G180900 Sobic002G075500--Sobic007G180900 Sobic002G075500--Sobic003G254700 Sobic006G156600 Sobic006G156600 Sobic002G075500--Sobic006G156600 Sobic004G111100 Sobic004G111100 Sobic003G254700--Sobic004G111100 Sobic004G007600 Sobic004G007600 Sobic003G254700--Sobic004G007600 Sobic003G254700--Sobic001G133900 Sobic003G254700--Sobic009G026101 Sobic001G072600 Sobic001G072600 Sobic003G254700--Sobic001G072600 Sobic003G254700--Sobic009G246700 Sobic003G254700--Sobic009G125900 Sobic003G254700--Sobic002G075500 Sobic002G218900 Sobic002G218900 Sobic003G254700--Sobic002G218900 Sobic001G159800 Sobic001G159800 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic001G437500 Sobic001G437500 Sobic010G090500--Sobic001G437500 Sobic006G267500 Sobic006G267500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic009G061000 Sobic009G061000 Sobic010G090500--Sobic009G061000 Sobic010G090500--Sobic009G125900 Sobic002G276600 Sobic002G276600 Sobic008G174900--Sobic002G276600 Sobic008G174900--Sobic001G437500 Sobic004G243800 Sobic004G243800 Sobic008G174900--Sobic004G243800 Sobic008G174900--Sobic006G267500 Sobic008G174900--Sobic010G090500 Sobic008G174900--Sobic009G026101 Sobic009G226900 Sobic009G226900 Sobic008G174900--Sobic009G226900 Sobic008G174900--Sobic010G096100 Sobic008G174900--Sobic009G206500
Octagon: transcription factors


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