Gene annotation
Transcriptome id Sobic.003G254700.1
Synonym I9H, Sb03g030990, IRX9-L
Functional annotation glycosyltransferase family 43 protein, putative, expressed
UniProt C5XG48
Pfam PF03360
Panther DB PTHR10896 PTHR10896:SF27
NCBI CDD KOG1476; Beta-1,3-glucuronyltransferase B3GAT1/SQV-8
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G27600 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os01g48440.1 : glycosyltransferase family 43 protein, putative, expressed
MaizeGDB (Corn) Zm00025a028068
Brachypodium KQK04923 , KQK04924 , KQK09166 , KQK09167
Barley -
Wheat TraesCS3B02G304000 , TraesCS3B02G304000 , TraesCS3A02G270100 , TraesCS3D02G269800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G254700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.004G007600 glycosyltransferase protein, putative, expressed -
3 Sobic.001G133900 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
4 Sobic.009G026101 - -
5 Sobic.001G072600 expressed protein -
6 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
7 Sobic.009G125900 expressed protein -
8 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
9 Sobic.002G218900 plant viral response family protein, putative, expressed -
10 Sobic.004G319600 polygalacturonase, putative, expressed -
11 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
12 Sobic.004G051300 galactosyltransferase, putative, expressed -
13 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
15 Sobic.010G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
16 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.008G178800 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
18 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
19 Sobic.002G118700 -(PubMedID : 28944535)@CESA3 - cellulose synthase, expressed K10999: cellulose synthase A
20 Sobic.006G156600 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic003G254700 Sobic003G254700 Sobic004G111100 Sobic004G111100 Sobic003G254700--Sobic004G111100 Sobic004G007600 Sobic004G007600 Sobic003G254700--Sobic004G007600 Sobic001G133900 Sobic001G133900 Sobic003G254700--Sobic001G133900 Sobic009G026101 Sobic009G026101 Sobic003G254700--Sobic009G026101 Sobic001G072600 Sobic001G072600 Sobic003G254700--Sobic001G072600 Sobic009G246700 Sobic009G246700 Sobic003G254700--Sobic009G246700 Sobic009G125900 Sobic009G125900 Sobic003G254700--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic003G254700--Sobic002G075500 Sobic002G218900 Sobic002G218900 Sobic003G254700--Sobic002G218900 Sobic010G101900 Sobic010G101900 Sobic004G111100--Sobic010G101900 Sobic007G047300 Sobic007G047300 Sobic004G111100--Sobic007G047300 Sobic004G111100--Sobic003G254700 Sobic009G162300 Sobic009G162300 Sobic004G111100--Sobic009G162300 Sobic003G227700 Sobic003G227700 Sobic004G111100--Sobic003G227700 Sobic001G360700 Sobic001G360700 Sobic004G111100--Sobic001G360700 Sobic002G207200 Sobic002G207200 Sobic004G111100--Sobic002G207200 Sobic004G111100--Sobic001G072600 Sobic009G034300 Sobic009G034300 Sobic004G111100--Sobic009G034300 Sobic004G007600--Sobic001G133900 Sobic004G007600--Sobic003G254700 Sobic004G007600--Sobic009G026101 Sobic004G319600 Sobic004G319600 Sobic004G007600--Sobic004G319600 Sobic004G007600--Sobic004G111100 Sobic006G075000 Sobic006G075000 Sobic004G007600--Sobic006G075000 Sobic004G007600--Sobic009G125900 Sobic004G007600--Sobic002G075500 Sobic006G156600 Sobic006G156600 Sobic004G007600--Sobic006G156600 Sobic001G133900--Sobic009G026101 Sobic001G133900--Sobic009G246700 Sobic001G133900--Sobic004G007600 Sobic001G133900--Sobic003G254700 Sobic010G180100 Sobic010G180100 Sobic001G133900--Sobic010G180100 Sobic001G133900--Sobic004G111100 Sobic001G133900--Sobic002G075500 Sobic009G079100 Sobic009G079100 Sobic001G133900--Sobic009G079100 Sobic001G133900--Sobic009G125900 Sobic009G026101--Sobic001G133900 Sobic009G063400 Sobic009G063400 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic009G026101--Sobic002G075500 Sobic009G026101--Sobic006G075000 Sobic009G026101--Sobic003G254700 Sobic010G096100 Sobic010G096100 Sobic009G026101--Sobic010G096100 Sobic002G167600 Sobic002G167600 Sobic001G072600--Sobic002G167600 Sobic001G072600--Sobic002G218900 Sobic007G119500 Sobic007G119500 Sobic001G072600--Sobic007G119500 Sobic001G072600--Sobic001G360700 Sobic004G047600 Sobic004G047600 Sobic001G072600--Sobic004G047600 Sobic006G144600 Sobic006G144600 Sobic001G072600--Sobic006G144600 Sobic001G072600--Sobic009G246700 Sobic001G072600--Sobic007G047300 Sobic009G170500 Sobic009G170500 Sobic001G072600--Sobic009G170500 Sobic009G246700--Sobic001G133900 Sobic009G246700--Sobic009G026101 Sobic001G406700 Sobic001G406700 Sobic009G246700--Sobic001G406700 Sobic009G246700--Sobic007G119500 Sobic009G246700--Sobic001G072600 Sobic009G246700--Sobic002G167600 Sobic009G246700--Sobic001G360700 Sobic001G460400 Sobic001G460400 Sobic009G246700--Sobic001G460400 Sobic009G246700--Sobic006G144600 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic002G118700 Sobic002G118700 Sobic009G125900--Sobic002G118700 Sobic010G090500 Sobic010G090500 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic004G051300 Sobic004G051300 Sobic009G125900--Sobic004G051300 Sobic009G125900--Sobic003G254700 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G075500--Sobic002G118700 Sobic002G075500--Sobic009G026101 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic007G180900 Sobic007G180900 Sobic002G075500--Sobic007G180900 Sobic002G075500--Sobic003G254700 Sobic002G075500--Sobic006G156600 Sobic002G218900--Sobic001G072600 Sobic002G218900--Sobic004G047600 Sobic002G218900--Sobic001G360700 Sobic002G218900--Sobic002G207200 Sobic003G352700 Sobic003G352700 Sobic002G218900--Sobic003G352700 Sobic002G218900--Sobic007G047300 Sobic002G218900--Sobic001G406700 Sobic002G218900--Sobic006G144600 Sobic002G218900--Sobic007G119500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.