Gene annotation
Transcriptome id Sobic.010G101900.2
Synonym GH9B8, AtGH9B8, Sb10g008880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
endoglucanase, putative, expressed
UniProt A0A1W0VSD1
Pfam PF00759
Panther DB PTHR22298 PTHR22298:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G32990 : glycosyl hydrolase 9B8
RAP-DB (Rice) LOC_Os02g50490.1 : endoglucanase, putative, expressed
MaizeGDB (Corn) Zm00025a040249 , Zm00025a057371 , Zm00025a019006 , Zm00025a037591 , Zm00025a021973 , Zm00025a032681 , Zm00025a013859 , Zm00025a049387 , Zm00025a018779 , Zm00025a046876
Brachypodium KQK03329 , KQJ93361 , KQK07034 , KQJ85266 , KQJ98284 , KQK02009 , KQK20451 , PNT76125 , KQJ90132
Barley HORVU6Hr1G077010.1 , HORVU6Hr1G077010.3 , HORVU6Hr1G077010.2 , HORVU6Hr1G077010.5 , HORVU6Hr1G077010.4 , HORVU6Hr1G077010.7 , HORVU6Hr1G077010.6 , HORVU6Hr1G077010.9 , HORVU6Hr1G077010.8 , HORVU6Hr1G077010.20 , HORVU6Hr1G077010.21 , HORVU6Hr1G077010.22 , HORVU2Hr1G120100.1 , HORVU2Hr1G120100.2 , HORVU2Hr1G120100.3 , HORVU5Hr1G060140.5 , HORVU5Hr1G060140.7 , HORVU5Hr1G060140.1 , HORVU6Hr1G022270.11 , HORVU6Hr1G022270.10 , HORVU5Hr1G060140.8 , HORVU5Hr1G060140.9 , HORVU5Hr1G098710.1 , HORVU7Hr1G040680.5 , HORVU7Hr1G040680.4 , HORVU7Hr1G040680.3 , HORVU7Hr1G040680.2 , HORVU6Hr1G077010.15 , HORVU6Hr1G077010.14 , HORVU6Hr1G077010.17 , HORVU6Hr1G077010.16 , HORVU6Hr1G077010.11 , HORVU6Hr1G077010.10 , HORVU6Hr1G077010.13 , HORVU6Hr1G077010.12 , HORVU6Hr1G077010.19 , HORVU6Hr1G077010.18 , HORVU5Hr1G060140.12 , HORVU5Hr1G060140.13 , HORVU5Hr1G060140.10 , HORVU5Hr1G060140.11 , HORVU6Hr1G022270.9 , HORVU6Hr1G022270.8 , HORVU6Hr1G022270.7 , HORVU6Hr1G022270.6 , HORVU6Hr1G022270.5 , HORVU6Hr1G022270.4 , HORVU6Hr1G022270.3 , HORVU6Hr1G022270.2 , HORVU6Hr1G022270.1 , HORVU6Hr1G022300.1 , HORVU7Hr1G040720.1
Wheat TraesCS6B02G342600 , TraesCS6A02G122100 , TraesCS7A02G144500 , TraesCS2A02G556300 , TraesCS7D02G146000 , TraesCS6D02G291800 , TraesCS2A02G556300 , TraesCS2B02G586600 , TraesCS2D02G557500 , TraesCS5B02G201100 , TraesCS2A02G352800 , TraesCS2A02G352800 , TraesCS2A02G352800 , TraesCS2A02G352800 , TraesCSU02G093600 , TraesCS6B02G150300 , TraesCS7B02G047000 , TraesCS7A02G144700 , TraesCS7B02G104600 , TraesCS5D02G208900 , TraesCS6D02G112100 , TraesCS7A02G197900 , TraesCS5A02G202600 , TraesCS7B02G046900 , TraesCS7A02G144400 , TraesCS7D02G201000 , TraesCS6A02G312400 , TraesCS6A02G312400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
3 Sobic.006G282300 - -
4 Sobic.003G151600 S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
5 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
6 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
7 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
8 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
9 Sobic.009G215000 - -
10 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
12 Sobic.009G236100 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
13 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
14 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
15 Sobic.003G219800 transferase family protein, putative, expressed -
16 Sobic.001G008900 - -
17 Sobic.003G389000 Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed K01188: beta-glucosidase
18 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
19 Sobic.001G483600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase


Gene co-expression network
sample Sobic010G101900 Sobic010G101900 Sobic004G111100 Sobic004G111100 Sobic010G101900--Sobic004G111100 Sobic007G047300 Sobic007G047300 Sobic010G101900--Sobic007G047300 Sobic006G282300 Sobic006G282300 Sobic010G101900--Sobic006G282300 Sobic003G151600 Sobic003G151600 Sobic010G101900--Sobic003G151600 Sobic002G252000 Sobic002G252000 Sobic010G101900--Sobic002G252000 Sobic004G071000 Sobic004G071000 Sobic010G101900--Sobic004G071000 Sobic010G069900 Sobic010G069900 Sobic010G101900--Sobic010G069900 Sobic003G227700 Sobic003G227700 Sobic010G101900--Sobic003G227700 Sobic009G215000 Sobic009G215000 Sobic010G101900--Sobic009G215000 Sobic004G111100--Sobic010G101900 Sobic004G111100--Sobic007G047300 Sobic003G254700 Sobic003G254700 Sobic004G111100--Sobic003G254700 Sobic009G162300 Sobic009G162300 Sobic004G111100--Sobic009G162300 Sobic004G111100--Sobic003G227700 Sobic001G360700 Sobic001G360700 Sobic004G111100--Sobic001G360700 Sobic002G207200 Sobic002G207200 Sobic004G111100--Sobic002G207200 Sobic001G072600 Sobic001G072600 Sobic004G111100--Sobic001G072600 Sobic009G034300 Sobic009G034300 Sobic004G111100--Sobic009G034300 Sobic007G047300--Sobic001G360700 Sobic004G047600 Sobic004G047600 Sobic007G047300--Sobic004G047600 Sobic007G047300--Sobic009G162300 Sobic003G352700 Sobic003G352700 Sobic007G047300--Sobic003G352700 Sobic001G471800 Sobic001G471800 Sobic007G047300--Sobic001G471800 Sobic007G047300--Sobic004G111100 Sobic002G146000 Sobic002G146000 Sobic007G047300--Sobic002G146000 Sobic007G047300--Sobic002G207200 Sobic002G203900 Sobic002G203900 Sobic007G047300--Sobic002G203900 Sobic002G365550 Sobic002G365550 Sobic006G282300--Sobic002G365550 Sobic006G282300--Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic006G282300--Sobic002G365801 Sobic006G028400 Sobic006G028400 Sobic006G282300--Sobic006G028400 Sobic008G055100 Sobic008G055100 Sobic006G282300--Sobic008G055100 Sobic010G096400 Sobic010G096400 Sobic006G282300--Sobic010G096400 Sobic010G212500 Sobic010G212500 Sobic006G282300--Sobic010G212500 Sobic003G119500 Sobic003G119500 Sobic006G282300--Sobic003G119500 Sobic007G178900 Sobic007G178900 Sobic006G282300--Sobic007G178900 Sobic001G040100 Sobic001G040100 Sobic003G151600--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G151600--Sobic005G112800 Sobic003G151600--Sobic010G101900 Sobic004G257000 Sobic004G257000 Sobic003G151600--Sobic004G257000 Sobic001G058300 Sobic001G058300 Sobic003G151600--Sobic001G058300 Sobic009G074500 Sobic009G074500 Sobic003G151600--Sobic009G074500 Sobic006G156000 Sobic006G156000 Sobic003G151600--Sobic006G156000 Sobic003G389000 Sobic003G389000 Sobic003G151600--Sobic003G389000 Sobic001G418100 Sobic001G418100 Sobic003G151600--Sobic001G418100 Sobic002G128800 Sobic002G128800 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic002G252000--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G252000--Sobic002G396400 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic001G107100 Sobic001G107100 Sobic002G252000--Sobic001G107100 Sobic003G443300 Sobic003G443300 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800 Sobic004G071000--Sobic002G365801 Sobic004G071000--Sobic002G365550 Sobic002G368300 Sobic002G368300 Sobic004G071000--Sobic002G368300 Sobic002G365500 Sobic002G365500 Sobic004G071000--Sobic002G365500 Sobic004G071000--Sobic008G055100 Sobic010G115700 Sobic010G115700 Sobic004G071000--Sobic010G115700 Sobic004G071000--Sobic010G212500 Sobic002G365600 Sobic002G365600 Sobic004G071000--Sobic002G365600 Sobic003G053400 Sobic003G053400 Sobic004G071000--Sobic003G053400 Sobic010G069900--Sobic003G227700 Sobic010G071400 Sobic010G071400 Sobic010G069900--Sobic010G071400 Sobic004G212300 Sobic004G212300 Sobic010G069900--Sobic004G212300 Sobic010G192432 Sobic010G192432 Sobic010G069900--Sobic010G192432 Sobic001G006201 Sobic001G006201 Sobic010G069900--Sobic001G006201 Sobic001G483600 Sobic001G483600 Sobic010G069900--Sobic001G483600 Sobic009G102600 Sobic009G102600 Sobic010G069900--Sobic009G102600 Sobic010G069900--Sobic010G101900 Sobic004G078800 Sobic004G078800 Sobic010G069900--Sobic004G078800 Sobic003G227700--Sobic010G069900 Sobic003G257400 Sobic003G257400 Sobic003G227700--Sobic003G257400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic004G106100 Sobic004G106100 Sobic003G227700--Sobic004G106100 Sobic002G053900 Sobic002G053900 Sobic009G215000--Sobic002G053900 Sobic001G046800 Sobic001G046800 Sobic009G215000--Sobic001G046800 Sobic009G008800 Sobic009G008800 Sobic009G215000--Sobic009G008800 Sobic010G106700 Sobic010G106700 Sobic009G215000--Sobic010G106700 Sobic001G484000 Sobic001G484000 Sobic009G215000--Sobic001G484000 Sobic009G072800 Sobic009G072800 Sobic009G215000--Sobic009G072800 Sobic005G052500 Sobic005G052500 Sobic009G215000--Sobic005G052500 Sobic001G208600 Sobic001G208600 Sobic009G215000--Sobic001G208600 Sobic003G206700 Sobic003G206700 Sobic009G215000--Sobic003G206700
Octagon: transcription factors


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