Gene annotation
Transcriptome id Sobic.001G008900.1
Synonym Sb01g000890
Functional annotation -
UniProt A0A1B6QGQ4
Pfam -
Panther DB PTHR34551
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G28440 : proline-rich family protein
RAP-DB (Rice) LOC_Os03g63540.1 : lysine-rich arabinogalactan protein 19 precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G100900 - -
2 Sobic.006G282300 - -
3 Sobic.010G180100 transferase family protein, putative, expressed -
4 Sobic.005G096101 - -
5 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
6 Sobic.002G254900 membrane protein, putative, expressed -
7 Sobic.010G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
8 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
9 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
10 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
11 Sobic.009G215000 - -
12 Sobic.005G088300 expressed protein -
13 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
14 Sobic.007G109600 expressed protein -
15 Sobic.001G409100 glycosyltransferase family 43 protein, putative, expressed -
16 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
17 Sobic.001G514700 "Cytochrome P450, family 78,"("PubMedID : 26759170,PubMedID : 24597475")@cytochrome P450, putative, expressed -
18 Sobic.009G122300 white-brown complex homolog protein 16, putative, expressed -
19 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
20 Sobic.008G055100 dirigent, putative, expressed -


Gene co-expression network
sample Sobic001G008900 Sobic001G008900 Sobic003G100900 Sobic003G100900 Sobic001G008900--Sobic003G100900 Sobic006G282300 Sobic006G282300 Sobic001G008900--Sobic006G282300 Sobic010G180100 Sobic010G180100 Sobic001G008900--Sobic010G180100 Sobic005G096101 Sobic005G096101 Sobic001G008900--Sobic005G096101 Sobic002G094600 Sobic002G094600 Sobic001G008900--Sobic002G094600 Sobic002G254900 Sobic002G254900 Sobic001G008900--Sobic002G254900 Sobic010G101900 Sobic010G101900 Sobic001G008900--Sobic010G101900 Sobic001G002800 Sobic001G002800 Sobic001G008900--Sobic001G002800 Sobic002G252000 Sobic002G252000 Sobic001G008900--Sobic002G252000 Sobic003G100900--Sobic001G008900 Sobic003G100900--Sobic002G252000 Sobic002G365500 Sobic002G365500 Sobic003G100900--Sobic002G365500 Sobic003G100900--Sobic005G096101 Sobic002G368300 Sobic002G368300 Sobic003G100900--Sobic002G368300 Sobic003G100900--Sobic010G180100 Sobic004G071000 Sobic004G071000 Sobic003G100900--Sobic004G071000 Sobic002G311501 Sobic002G311501 Sobic003G100900--Sobic002G311501 Sobic005G088300 Sobic005G088300 Sobic003G100900--Sobic005G088300 Sobic002G365550 Sobic002G365550 Sobic006G282300--Sobic002G365550 Sobic006G282300--Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic006G282300--Sobic002G365801 Sobic006G028400 Sobic006G028400 Sobic006G282300--Sobic006G028400 Sobic008G055100 Sobic008G055100 Sobic006G282300--Sobic008G055100 Sobic010G096400 Sobic010G096400 Sobic006G282300--Sobic010G096400 Sobic010G212500 Sobic010G212500 Sobic006G282300--Sobic010G212500 Sobic003G119500 Sobic003G119500 Sobic006G282300--Sobic003G119500 Sobic007G178900 Sobic007G178900 Sobic006G282300--Sobic007G178900 Sobic010G131400 Sobic010G131400 Sobic010G180100--Sobic010G131400 Sobic010G180100--Sobic002G254900 Sobic002G167600 Sobic002G167600 Sobic010G180100--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic010G180100--Sobic001G360700 Sobic010G180100--Sobic001G002800 Sobic001G224300 Sobic001G224300 Sobic010G180100--Sobic001G224300 Sobic001G409100 Sobic001G409100 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic010G180100--Sobic003G387500 Sobic005G096101--Sobic001G008900 Sobic005G096101--Sobic002G311501 Sobic005G096101--Sobic006G282300 Sobic009G221900 Sobic009G221900 Sobic005G096101--Sobic009G221900 Sobic005G096101--Sobic002G365550 Sobic009G215000 Sobic009G215000 Sobic005G096101--Sobic009G215000 Sobic005G096101--Sobic004G071000 Sobic009G072800 Sobic009G072800 Sobic005G096101--Sobic009G072800 Sobic007G047300 Sobic007G047300 Sobic005G096101--Sobic007G047300 Sobic004G165300 Sobic004G165300 Sobic002G094600--Sobic004G165300 Sobic001G471800 Sobic001G471800 Sobic002G094600--Sobic001G471800 Sobic003G236600 Sobic003G236600 Sobic002G094600--Sobic003G236600 Sobic003G183300 Sobic003G183300 Sobic002G094600--Sobic003G183300 Sobic009G008800 Sobic009G008800 Sobic002G094600--Sobic009G008800 Sobic001G484000 Sobic001G484000 Sobic002G094600--Sobic001G484000 Sobic004G193500 Sobic004G193500 Sobic002G094600--Sobic004G193500 Sobic002G146000 Sobic002G146000 Sobic002G094600--Sobic002G146000 Sobic002G094600--Sobic006G282300 Sobic002G254900--Sobic001G002800 Sobic010G096700 Sobic010G096700 Sobic002G254900--Sobic010G096700 Sobic002G254900--Sobic010G180100 Sobic002G254900--Sobic004G047600 Sobic002G254900--Sobic001G360700 Sobic001G503000 Sobic001G503000 Sobic002G254900--Sobic001G503000 Sobic001G506600 Sobic001G506600 Sobic002G254900--Sobic001G506600 Sobic007G090472 Sobic007G090472 Sobic002G254900--Sobic007G090472 Sobic002G254900--Sobic002G167600 Sobic004G111100 Sobic004G111100 Sobic010G101900--Sobic004G111100 Sobic010G101900--Sobic007G047300 Sobic010G101900--Sobic006G282300 Sobic003G151600 Sobic003G151600 Sobic010G101900--Sobic003G151600 Sobic010G101900--Sobic002G252000 Sobic010G101900--Sobic004G071000 Sobic010G069900 Sobic010G069900 Sobic010G101900--Sobic010G069900 Sobic003G227700 Sobic003G227700 Sobic010G101900--Sobic003G227700 Sobic010G101900--Sobic009G215000 Sobic001G002800--Sobic002G254900 Sobic001G002800--Sobic001G503000 Sobic001G002800--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G002800--Sobic001G506600 Sobic002G128800 Sobic002G128800 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic001G418100 Sobic001G418100 Sobic002G252000--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G252000--Sobic002G396400 Sobic006G156000 Sobic006G156000 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic001G107100 Sobic001G107100 Sobic002G252000--Sobic001G107100 Sobic003G443300 Sobic003G443300 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800
Octagon: transcription factors


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