Gene annotation
Transcriptome id Sobic.001G409100.1
Synonym Sb01g038640, IRX9
Functional annotation glycosyltransferase family 43 protein, putative, expressed
UniProt C5WNK7
Pfam PF03360
Panther DB PTHR10896 PTHR10896:SF25
NCBI CDD KOG1476; Beta-1,3-glucuronyltransferase B3GAT1/SQV-8
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G37090 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os03g17850.1 : glycosyltransferase family 43 protein, putative, expressed
MaizeGDB (Corn) Zm00025a001950 , Zm00025a052691
Brachypodium KQK07841 , KQK22192
Barley HORVU1Hr1G013190.4 , HORVU1Hr1G013190.1 , HORVU1Hr1G013190.3 , HORVU1Hr1G013190.2 , HORVU4Hr1G056770.3 , HORVU4Hr1G056770.2 , HORVU4Hr1G056770.1 , HORVU4Hr1G056770.6 , HORVU4Hr1G056770.5 , HORVU4Hr1G056770.4 , HORVU4Hr1G070360.1
Wheat TraesCS1B02G081900 , TraesCS4A02G107400 , TraesCS4A02G107400 , TraesCS4A02G107400 , TraesCS4D02G197300 , TraesCS4D02G197300 , TraesCS4D02G197300 , TraesCS2B02G096800 , TraesCS2D02G080500 , TraesCS1D02G064500 , TraesCS1A02G064000 , TraesCS2A02G082600 , TraesCS4B02G197000 , TraesCS4B02G197000
Populus -


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cDNA sequences
Sobic.001G409100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
2 Sobic.003G410800 exostosin family domain containing protein, expressed -
3 Sobic.004G221300 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
4 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
6 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
7 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
8 Sobic.010G180100 transferase family protein, putative, expressed -
9 Sobic.009G220100 exostosin family domain containing protein, expressed -
10 Sobic.001G360800 cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
11 Sobic.009G034300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
12 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
13 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
14 Sobic.002G128800 fiber protein Fb34, putative, expressed -
15 Sobic.008G110200 OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed K09377: cysteine and glycine-rich protein
16 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
17 Sobic.002G368600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
18 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
19 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.006G148800 "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@phenylalanine ammonia-lyase, putative, expressed K13064: phenylalanine/tyrosine ammonia-lyase


Gene co-expression network
sample Sobic001G409100 Sobic001G409100 Sobic002G396400 Sobic002G396400 Sobic001G409100--Sobic002G396400 Sobic003G410800 Sobic003G410800 Sobic001G409100--Sobic003G410800 Sobic004G221300 Sobic004G221300 Sobic001G409100--Sobic004G221300 Sobic006G036400 Sobic006G036400 Sobic001G409100--Sobic006G036400 Sobic001G418100 Sobic001G418100 Sobic001G409100--Sobic001G418100 Sobic001G224300 Sobic001G224300 Sobic001G409100--Sobic001G224300 Sobic001G038300 Sobic001G038300 Sobic001G409100--Sobic001G038300 Sobic010G180100 Sobic010G180100 Sobic001G409100--Sobic010G180100 Sobic009G220100 Sobic009G220100 Sobic001G409100--Sobic009G220100 Sobic002G396400--Sobic001G418100 Sobic002G396400--Sobic001G038300 Sobic001G475500 Sobic001G475500 Sobic002G396400--Sobic001G475500 Sobic002G396400--Sobic001G409100 Sobic002G128800 Sobic002G128800 Sobic002G396400--Sobic002G128800 Sobic009G232100 Sobic009G232100 Sobic002G396400--Sobic009G232100 Sobic002G154600 Sobic002G154600 Sobic002G396400--Sobic002G154600 Sobic009G181800 Sobic009G181800 Sobic002G396400--Sobic009G181800 Sobic009G088900 Sobic009G088900 Sobic002G396400--Sobic009G088900 Sobic003G410800--Sobic009G220100 Sobic003G410800--Sobic001G409100 Sobic003G410800--Sobic001G418100 Sobic003G410800--Sobic002G396400 Sobic003G410800--Sobic002G154600 Sobic003G410800--Sobic004G221300 Sobic009G034300 Sobic009G034300 Sobic003G410800--Sobic009G034300 Sobic003G410800--Sobic002G128800 Sobic010G052200 Sobic010G052200 Sobic003G410800--Sobic010G052200 Sobic001G360800 Sobic001G360800 Sobic004G221300--Sobic001G360800 Sobic004G221300--Sobic009G034300 Sobic004G221300--Sobic001G409100 Sobic004G221300--Sobic003G410800 Sobic003G296400 Sobic003G296400 Sobic004G221300--Sobic003G296400 Sobic008G110200 Sobic008G110200 Sobic004G221300--Sobic008G110200 Sobic004G221300--Sobic001G224300 Sobic004G221300--Sobic009G220100 Sobic004G221300--Sobic006G036400 Sobic006G036400--Sobic001G224300 Sobic006G036400--Sobic003G296400 Sobic003G062000 Sobic003G062000 Sobic006G036400--Sobic003G062000 Sobic002G205500 Sobic002G205500 Sobic006G036400--Sobic002G205500 Sobic006G036400--Sobic001G409100 Sobic006G036400--Sobic009G034300 Sobic009G226900 Sobic009G226900 Sobic006G036400--Sobic009G226900 Sobic006G036400--Sobic001G360800 Sobic006G036400--Sobic004G221300 Sobic003G219800 Sobic003G219800 Sobic001G418100--Sobic003G219800 Sobic005G112800 Sobic005G112800 Sobic001G418100--Sobic005G112800 Sobic001G418100--Sobic002G396400 Sobic001G418100--Sobic009G181800 Sobic001G418100--Sobic002G154600 Sobic001G514200 Sobic001G514200 Sobic001G418100--Sobic001G514200 Sobic001G418100--Sobic002G128800 Sobic001G418100--Sobic001G475500 Sobic008G055100 Sobic008G055100 Sobic001G418100--Sobic008G055100 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic001G224300--Sobic006G036400 Sobic003G387500 Sobic003G387500 Sobic001G224300--Sobic003G387500 Sobic001G224300--Sobic009G226900 Sobic007G223600 Sobic007G223600 Sobic001G224300--Sobic007G223600 Sobic001G224300--Sobic009G034300 Sobic001G224300--Sobic004G221300 Sobic001G224300--Sobic001G409100 Sobic001G038300--Sobic002G396400 Sobic001G107100 Sobic001G107100 Sobic001G038300--Sobic001G107100 Sobic003G250700 Sobic003G250700 Sobic001G038300--Sobic003G250700 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G434300 Sobic001G434300 Sobic001G038300--Sobic001G434300 Sobic001G038300--Sobic001G475500 Sobic007G150800 Sobic007G150800 Sobic001G038300--Sobic007G150800 Sobic003G122200 Sobic003G122200 Sobic001G038300--Sobic003G122200 Sobic010G131400 Sobic010G131400 Sobic010G180100--Sobic010G131400 Sobic002G254900 Sobic002G254900 Sobic010G180100--Sobic002G254900 Sobic002G167600 Sobic002G167600 Sobic010G180100--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic010G180100--Sobic001G360700 Sobic001G002800 Sobic001G002800 Sobic010G180100--Sobic001G002800 Sobic010G180100--Sobic001G224300 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic010G180100--Sobic003G387500 Sobic010G238800 Sobic010G238800 Sobic009G220100--Sobic010G238800 Sobic009G220100--Sobic003G410800 Sobic009G220100--Sobic001G418100 Sobic009G220100--Sobic009G181800 Sobic009G220100--Sobic003G219800 Sobic009G220100--Sobic001G409100 Sobic009G220100--Sobic002G396400 Sobic009G220100--Sobic004G221300 Sobic009G220100--Sobic002G128800
Octagon: transcription factors


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