Gene annotation
| Transcriptome id | Sobic.002G368600.1 |
|---|---|
| Synonym | Sb02g038770, ATRGP1, RGP1 |
| Functional annotation | alpha-1,4-glucan-protein synthase, putative, expressed |
| UniProt | C5XDW6 |
| Pfam | PF03214 |
| Panther DB | PTHR31682 PTHR31682:SF5 |
| NCBI CDD | - |
| KEGG Orthology | K13379; RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase |
| Gene Ontology | GO:0016866; intramolecular transferase activity |
Orthologs (automatic annotation)
| TAIR | AT3G02230 : reversibly glycosylated polypeptide 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g41360.1 : alpha-1,4-glucan-protein synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a017325 , Zm00025a048700 , Zm00025a007204 |
| Brachypodium | KQK09873 , KQK14266 , KQK15337 |
| Barley | HORVU3Hr1G073780.1 , HORVU2Hr1G033100.3 , HORVU2Hr1G033100.2 , HORVU2Hr1G033100.1 , HORVU4Hr1G038960.2 , HORVU4Hr1G038960.3 , HORVU4Hr1G038960.1 |
| Wheat | TraesCS3B02G333100 , TraesCS2A02G174400 , TraesCS3D02G298600 , TraesCS4B02G144900 , TraesCS4D02G151900 , TraesCS4D02G151900 , TraesCS3A02G303200 , TraesCS2B02G200900 , TraesCS2D02G181700 , TraesCS4A02G166900 |
| Populus | PNT23746 , PNT16733 , PNT40778 , PNS96146 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G410800 | exostosin family domain containing protein, expressed | - |
| 2 | Sobic.009G034300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed | - |
| 3 | Sobic.002G101300 | erythronate-4-phosphate dehydrogenase domain containing protein, expressed | - |
| 4 | Sobic.004G221300 | transporter-related, putative, expressed | K15285: solute carrier family 35, member E3 |
| 5 | Sobic.001G409100 | glycosyltransferase family 43 protein, putative, expressed | - |
| 6 | Sobic.001G342400 | SPX domain-3("PubMedID : 26759170,PubMedID : 24597475")@SPX domain-containing protein, putative, expressed | - |
| 7 | Sobic.003G151600 | S-adenosylmethionine synthetase, putative, expressed | K00789: S-adenosylmethionine synthetase |
| 8 | Sobic.001G418100 | NAD dependent epimerase/dehydratase family domain containing protein, expressed | K08678: UXS1, UDP-glucuronate decarboxylase |
| 9 | Sobic.005G112800 | erythronate-4-phosphate dehydrogenase, putative, expressed | K01251: E3.3.1.1, adenosylhomocysteinase |
| 10 | Sobic.010G138300 | DUF617 domain containing protein, expressed | - |
| 11 | Sobic.006G003100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed | - |
| 12 | Sobic.008G005100 | PMR5, putative, expressed | - |
| 13 | Sobic.002G154600 | fasciclin-like arabinogalactan protein 8 precursor, putative, expressed | - |
| 14 | Sobic.001G379400 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 15 | Sobic.009G074500 | expressed protein | - |
| 16 | Sobic.003G122200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed | K07937: ADP-ribosylation factor 1/2 K07977: Arf/Sar family, other |
| 17 | Sobic.005G160700 | invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 18 | Sobic.002G207200 | - | - |
| 19 | Sobic.004G257000 | transmembrane 9 superfamily member, putative, expressed | - |
| 20 | Sobic.001G038300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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