Gene annotation
Transcriptome id Sobic.002G101300.1
Synonym Sb02g008660
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt C5X3F4
Pfam PF02826 PF00389
Panther DB PTHR10996:SF108 PTHR10996
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G72190 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os07g16040.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013625
Brachypodium KQK20201 , KQK20200
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
2 Sobic.010G018500 expressed protein -
3 Sobic.002G368600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
4 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
5 Sobic.003G045600 aminotransferase, classes I and II, domain containing protein, expressed -
6 Sobic.006G259401 - K06130: lysophospholipase II
7 Sobic.002G271300 NC domain-containing protein, putative, expressed -
8 Sobic.004G257000 transmembrane 9 superfamily member, putative, expressed -
9 Sobic.001G392200 CAS1 domain-containing protein 1 precursor, putative, expressed -
10 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
11 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
12 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
13 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
14 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
15 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
16 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
17 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
18 Sobic.002G111500 Fatty acyl-ACP thioesterases B FATB (At)(PubMedID : 27208977)@myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
19 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
20 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase


Gene co-expression network
sample Sobic002G101300 Sobic002G101300 Sobic010G101600 Sobic010G101600 Sobic002G101300--Sobic010G101600 Sobic010G018500 Sobic010G018500 Sobic002G101300--Sobic010G018500 Sobic002G368600 Sobic002G368600 Sobic002G101300--Sobic002G368600 Sobic003G261100 Sobic003G261100 Sobic002G101300--Sobic003G261100 Sobic003G045600 Sobic003G045600 Sobic002G101300--Sobic003G045600 Sobic006G259401 Sobic006G259401 Sobic002G101300--Sobic006G259401 Sobic002G271300 Sobic002G271300 Sobic002G101300--Sobic002G271300 Sobic004G257000 Sobic004G257000 Sobic002G101300--Sobic004G257000 Sobic001G392200 Sobic001G392200 Sobic002G101300--Sobic001G392200 Sobic010G089500 Sobic010G089500 Sobic010G101600--Sobic010G089500 Sobic004G056400 Sobic004G056400 Sobic010G101600--Sobic004G056400 Sobic003G096000 Sobic003G096000 Sobic010G101600--Sobic003G096000 Sobic009G111400 Sobic009G111400 Sobic010G101600--Sobic009G111400 Sobic001G370700 Sobic001G370700 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic009G244900 Sobic009G244900 Sobic010G101600--Sobic009G244900 Sobic010G101600--Sobic003G261100 Sobic002G186900 Sobic002G186900 Sobic010G101600--Sobic002G186900 Sobic001G146000 Sobic001G146000 Sobic010G018500--Sobic001G146000 Sobic002G232400 Sobic002G232400 Sobic010G018500--Sobic002G232400 Sobic003G266400 Sobic003G266400 Sobic010G018500--Sobic003G266400 Sobic001G543400 Sobic001G543400 Sobic010G018500--Sobic001G543400 Sobic008G084100 Sobic008G084100 Sobic010G018500--Sobic008G084100 Sobic002G153000 Sobic002G153000 Sobic010G018500--Sobic002G153000 Sobic010G018500--Sobic002G101300 Sobic010G042600 Sobic010G042600 Sobic010G018500--Sobic010G042600 Sobic004G356300 Sobic004G356300 Sobic010G018500--Sobic004G356300 Sobic003G410800 Sobic003G410800 Sobic002G368600--Sobic003G410800 Sobic009G034300 Sobic009G034300 Sobic002G368600--Sobic009G034300 Sobic002G368600--Sobic002G101300 Sobic004G221300 Sobic004G221300 Sobic002G368600--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic002G368600--Sobic001G409100 Sobic001G342400 Sobic001G342400 Sobic002G368600--Sobic001G342400 Sobic003G151600 Sobic003G151600 Sobic002G368600--Sobic003G151600 Sobic001G418100 Sobic001G418100 Sobic002G368600--Sobic001G418100 Sobic005G112800 Sobic005G112800 Sobic002G368600--Sobic005G112800 Sobic003G261100--Sobic001G370700 Sobic002G131600 Sobic002G131600 Sobic003G261100--Sobic002G131600 Sobic001G057300 Sobic001G057300 Sobic003G261100--Sobic001G057300 Sobic006G035900 Sobic006G035900 Sobic003G261100--Sobic006G035900 Sobic009G115700 Sobic009G115700 Sobic003G261100--Sobic009G115700 Sobic007G191600 Sobic007G191600 Sobic003G261100--Sobic007G191600 Sobic004G155100 Sobic004G155100 Sobic003G261100--Sobic004G155100 Sobic001G214900 Sobic001G214900 Sobic003G261100--Sobic001G214900 Sobic001G501600 Sobic001G501600 Sobic003G261100--Sobic001G501600 Sobic003G045600--Sobic006G259401 Sobic003G236800 Sobic003G236800 Sobic003G045600--Sobic003G236800 Sobic003G045600--Sobic002G101300 Sobic004G079700 Sobic004G079700 Sobic003G045600--Sobic004G079700 Sobic002G153100 Sobic002G153100 Sobic003G045600--Sobic002G153100 Sobic001G140000 Sobic001G140000 Sobic003G045600--Sobic001G140000 Sobic007G119800 Sobic007G119800 Sobic003G045600--Sobic007G119800 Sobic002G274600 Sobic002G274600 Sobic003G045600--Sobic002G274600 Sobic008G151500 Sobic008G151500 Sobic003G045600--Sobic008G151500 Sobic006G259401--Sobic003G045600 Sobic006G259401--Sobic008G151500 Sobic006G259401--Sobic003G236800 Sobic006G259401--Sobic002G101300 Sobic007G120800 Sobic007G120800 Sobic006G259401--Sobic007G120800 Sobic006G259401--Sobic001G140000 Sobic002G283100 Sobic002G283100 Sobic006G259401--Sobic002G283100 Sobic006G259401--Sobic001G392200 Sobic007G179900 Sobic007G179900 Sobic006G259401--Sobic007G179900 Sobic009G059500 Sobic009G059500 Sobic002G271300--Sobic009G059500 Sobic002G271300--Sobic002G186900 Sobic005G022500 Sobic005G022500 Sobic002G271300--Sobic005G022500 Sobic010G131400 Sobic010G131400 Sobic002G271300--Sobic010G131400 Sobic008G168100 Sobic008G168100 Sobic002G271300--Sobic008G168100 Sobic002G254900 Sobic002G254900 Sobic002G271300--Sobic002G254900 Sobic003G087700 Sobic003G087700 Sobic002G271300--Sobic003G087700 Sobic008G062900 Sobic008G062900 Sobic002G271300--Sobic008G062900 Sobic010G114000 Sobic010G114000 Sobic002G271300--Sobic010G114000 Sobic001G217500 Sobic001G217500 Sobic004G257000--Sobic001G217500 Sobic004G257000--Sobic003G151600 Sobic001G040100 Sobic001G040100 Sobic004G257000--Sobic001G040100 Sobic004G257000--Sobic002G101300 Sobic001G031900 Sobic001G031900 Sobic004G257000--Sobic001G031900 Sobic010G253300 Sobic010G253300 Sobic004G257000--Sobic010G253300 Sobic004G257000--Sobic006G035900 Sobic003G348800 Sobic003G348800 Sobic004G257000--Sobic003G348800 Sobic003G389000 Sobic003G389000 Sobic004G257000--Sobic003G389000 Sobic002G070300 Sobic002G070300 Sobic001G392200--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G392200--Sobic009G041800 Sobic001G392200--Sobic002G232400 Sobic001G011000 Sobic001G011000 Sobic001G392200--Sobic001G011000 Sobic001G392200--Sobic002G153000 Sobic001G392200--Sobic010G101600 Sobic001G392200--Sobic002G101300 Sobic004G218600 Sobic004G218600 Sobic001G392200--Sobic004G218600 Sobic001G392200--Sobic002G186900
Octagon: transcription factors


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