Gene annotation
Transcriptome id Sobic.004G257000.2,Sobic.004G257000.1
Synonym Sb04g029560
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt A0A194YRP4 , A0A194YRK5
Pfam PF02990
Panther DB PTHR10766:SF56 PTHR10766 PTHR10766 PTHR10766:SF56
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G12650 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os05g07650.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a032557 , Zm00025a020794
Brachypodium KQK01548 , PNT69504 , PNT69505 , KQK01166
Barley HORVU6Hr1G071780.3 , HORVU6Hr1G071780.2 , HORVU6Hr1G071780.1 , HORVU6Hr1G071780.6 , HORVU6Hr1G071780.5 , HORVU6Hr1G071780.4
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G257000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G217500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.003G151600 S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
3 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
4 Sobic.002G101300 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
5 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
6 Sobic.010G253300 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor 19, putative, expressed -
7 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
8 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
9 Sobic.003G389000 Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed K01188: beta-glucosidase
10 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
11 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
12 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
13 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
14 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
15 Sobic.002G368600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
16 Sobic.001G307700 expressed protein -
17 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.002G361700 expressed protein -
19 Sobic.001G102100 DUF617 domain containing protein, expressed -
20 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G257000 Sobic004G257000 Sobic001G217500 Sobic001G217500 Sobic004G257000--Sobic001G217500 Sobic003G151600 Sobic003G151600 Sobic004G257000--Sobic003G151600 Sobic001G040100 Sobic001G040100 Sobic004G257000--Sobic001G040100 Sobic002G101300 Sobic002G101300 Sobic004G257000--Sobic002G101300 Sobic001G031900 Sobic001G031900 Sobic004G257000--Sobic001G031900 Sobic010G253300 Sobic010G253300 Sobic004G257000--Sobic010G253300 Sobic006G035900 Sobic006G035900 Sobic004G257000--Sobic006G035900 Sobic003G348800 Sobic003G348800 Sobic004G257000--Sobic003G348800 Sobic003G389000 Sobic003G389000 Sobic004G257000--Sobic003G389000 Sobic001G217500--Sobic004G257000 Sobic001G217500--Sobic001G031900 Sobic002G395000 Sobic002G395000 Sobic001G217500--Sobic002G395000 Sobic003G218400 Sobic003G218400 Sobic001G217500--Sobic003G218400 Sobic007G013900 Sobic007G013900 Sobic001G217500--Sobic007G013900 Sobic004G170400 Sobic004G170400 Sobic001G217500--Sobic004G170400 Sobic010G059300 Sobic010G059300 Sobic001G217500--Sobic010G059300 Sobic002G078300 Sobic002G078300 Sobic001G217500--Sobic002G078300 Sobic006G058900 Sobic006G058900 Sobic001G217500--Sobic006G058900 Sobic003G151600--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G151600--Sobic005G112800 Sobic010G101900 Sobic010G101900 Sobic003G151600--Sobic010G101900 Sobic003G151600--Sobic004G257000 Sobic001G058300 Sobic001G058300 Sobic003G151600--Sobic001G058300 Sobic009G074500 Sobic009G074500 Sobic003G151600--Sobic009G074500 Sobic006G156000 Sobic006G156000 Sobic003G151600--Sobic006G156000 Sobic003G151600--Sobic003G389000 Sobic001G418100 Sobic001G418100 Sobic003G151600--Sobic001G418100 Sobic001G040100--Sobic005G112800 Sobic003G219800 Sobic003G219800 Sobic001G040100--Sobic003G219800 Sobic002G356400 Sobic002G356400 Sobic001G040100--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic001G040100--Sobic003G209000 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic001G040100--Sobic006G156000 Sobic002G418400 Sobic002G418400 Sobic001G040100--Sobic002G418400 Sobic002G257300 Sobic002G257300 Sobic001G040100--Sobic002G257300 Sobic010G101600 Sobic010G101600 Sobic002G101300--Sobic010G101600 Sobic010G018500 Sobic010G018500 Sobic002G101300--Sobic010G018500 Sobic002G368600 Sobic002G368600 Sobic002G101300--Sobic002G368600 Sobic003G261100 Sobic003G261100 Sobic002G101300--Sobic003G261100 Sobic003G045600 Sobic003G045600 Sobic002G101300--Sobic003G045600 Sobic006G259401 Sobic006G259401 Sobic002G101300--Sobic006G259401 Sobic002G271300 Sobic002G271300 Sobic002G101300--Sobic002G271300 Sobic002G101300--Sobic004G257000 Sobic001G392200 Sobic001G392200 Sobic002G101300--Sobic001G392200 Sobic001G031900--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic001G031900--Sobic004G202100 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic004G344800 Sobic004G344800 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic010G253300--Sobic001G031900 Sobic010G253300--Sobic004G257000 Sobic010G253300--Sobic006G058900 Sobic010G253300--Sobic004G202100 Sobic010G253300--Sobic003G348800 Sobic010G253300--Sobic002G395000 Sobic001G409900 Sobic001G409900 Sobic010G253300--Sobic001G409900 Sobic004G262300 Sobic004G262300 Sobic010G253300--Sobic004G262300 Sobic010G253300--Sobic001G217500 Sobic001G057300 Sobic001G057300 Sobic006G035900--Sobic001G057300 Sobic006G216600 Sobic006G216600 Sobic006G035900--Sobic006G216600 Sobic006G035900--Sobic005G112800 Sobic008G132400 Sobic008G132400 Sobic006G035900--Sobic008G132400 Sobic001G334300 Sobic001G334300 Sobic006G035900--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic006G035900--Sobic002G304900 Sobic010G264300 Sobic010G264300 Sobic006G035900--Sobic010G264300 Sobic006G035900--Sobic003G261100 Sobic001G370700 Sobic001G370700 Sobic006G035900--Sobic001G370700 Sobic001G338400 Sobic001G338400 Sobic003G348800--Sobic001G338400 Sobic001G281900 Sobic001G281900 Sobic003G348800--Sobic001G281900 Sobic002G342500 Sobic002G342500 Sobic003G348800--Sobic002G342500 Sobic001G230100 Sobic001G230100 Sobic003G348800--Sobic001G230100 Sobic001G220900 Sobic001G220900 Sobic003G348800--Sobic001G220900 Sobic004G160200 Sobic004G160200 Sobic003G348800--Sobic004G160200 Sobic001G109300 Sobic001G109300 Sobic003G348800--Sobic001G109300 Sobic003G348800--Sobic004G257000 Sobic008G150300 Sobic008G150300 Sobic003G348800--Sobic008G150300 Sobic002G101400 Sobic002G101400 Sobic003G389000--Sobic002G101400 Sobic010G113100 Sobic010G113100 Sobic003G389000--Sobic010G113100 Sobic003G203600 Sobic003G203600 Sobic003G389000--Sobic003G203600 Sobic002G216100 Sobic002G216100 Sobic003G389000--Sobic002G216100 Sobic001G067100 Sobic001G067100 Sobic003G389000--Sobic001G067100 Sobic002G185800 Sobic002G185800 Sobic003G389000--Sobic002G185800 Sobic006G092700 Sobic006G092700 Sobic003G389000--Sobic006G092700 Sobic007G057400 Sobic007G057400 Sobic003G389000--Sobic007G057400 Sobic007G073000 Sobic007G073000 Sobic003G389000--Sobic007G073000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.