Gene annotation
Transcriptome id Sobic.010G253300.1,Sobic.010G253300.2
Synonym Sb10g029130, auxin response factor, ARF11, SbARF25, ARF19, IAA22
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123)
auxin response factor 19, putative, expressed
UniProt A0A194YLE5 , C5Z987
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G19220 : auxin response factor 19
RAP-DB (Rice) LOC_Os06g48950.1 : auxin response factor 19, putative, expressed
MaizeGDB (Corn) Zm00025a018387 , Zm00025a018959
Brachypodium KQJ93247 , KQJ93248 , KQJ98997 , PNT68426 , KQK17417
Barley HORVU2Hr1G109650.9 , HORVU2Hr1G109650.8 , HORVU2Hr1G109650.1 , HORVU2Hr1G109650.3 , HORVU2Hr1G109650.2 , HORVU2Hr1G109650.5 , HORVU2Hr1G109650.4 , HORVU2Hr1G109650.7 , HORVU2Hr1G109650.6 , HORVU6Hr1G020330.27 , HORVU6Hr1G020330.26 , HORVU6Hr1G020330.25 , HORVU6Hr1G020330.24 , HORVU6Hr1G020330.22 , HORVU6Hr1G020330.21 , HORVU6Hr1G020330.20 , HORVU6Hr1G020330.29 , HORVU6Hr1G020330.28 , HORVU7Hr1G096460.8 , HORVU7Hr1G096460.9 , HORVU7Hr1G096460.4 , HORVU7Hr1G096460.5 , HORVU7Hr1G096460.6 , HORVU7Hr1G096460.7 , HORVU7Hr1G096460.1 , HORVU7Hr1G096460.2 , HORVU7Hr1G096460.3 , HORVU6Hr1G020330.8 , HORVU6Hr1G020330.9 , HORVU6Hr1G020330.4 , HORVU6Hr1G020330.5 , HORVU6Hr1G020330.6 , HORVU6Hr1G020330.7 , HORVU6Hr1G020330.3 , HORVU5Hr1G015560.2 , HORVU5Hr1G015560.3 , HORVU5Hr1G015560.1 , HORVU5Hr1G015560.4 , HORVU7Hr1G051930.7 , HORVU7Hr1G051930.6 , HORVU7Hr1G051930.5 , HORVU7Hr1G051930.4 , HORVU7Hr1G051930.3 , HORVU7Hr1G051930.2 , HORVU7Hr1G051930.1 , HORVU7Hr1G051930.9 , HORVU7Hr1G051930.8 , HORVU3Hr1G022060.2 , HORVU3Hr1G022060.1 , HORVU6Hr1G020330.30 , HORVU6Hr1G020330.32 , HORVU6Hr1G020330.33 , HORVU7Hr1G096460.18 , HORVU7Hr1G096460.19 , HORVU7Hr1G096460.16 , HORVU7Hr1G096460.17 , HORVU7Hr1G096460.14 , HORVU7Hr1G096460.15 , HORVU7Hr1G096460.12 , HORVU7Hr1G096460.13 , HORVU7Hr1G096460.10 , HORVU7Hr1G096460.11 , HORVU7Hr1G096460.27 , HORVU7Hr1G096460.26 , HORVU7Hr1G096460.25 , HORVU7Hr1G096460.24 , HORVU7Hr1G096460.23 , HORVU7Hr1G096460.22 , HORVU7Hr1G096460.21 , HORVU7Hr1G096460.20 , HORVU7Hr1G096460.28 , HORVU2Hr1G109650.18 , HORVU2Hr1G109650.15 , HORVU2Hr1G109650.14 , HORVU2Hr1G109650.17 , HORVU2Hr1G109650.16 , HORVU2Hr1G109650.11 , HORVU2Hr1G109650.10 , HORVU2Hr1G109650.13 , HORVU2Hr1G109650.12 , HORVU6Hr1G020330.18 , HORVU6Hr1G020330.19 , HORVU6Hr1G020330.16 , HORVU6Hr1G020330.17 , HORVU6Hr1G020330.14 , HORVU6Hr1G020330.15 , HORVU6Hr1G020330.12 , HORVU6Hr1G020330.13 , HORVU6Hr1G020330.10 , HORVU6Hr1G020330.11
Wheat TraesCS2B02G519200 , TraesCS7D02G409700 , TraesCS7D02G409700 , TraesCS2A02G491000 , TraesCS6D02G102300 , TraesCS7B02G316600 , TraesCS6A02G113000 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS7B02G138900 , TraesCS2B02G519200 , TraesCS2D02G491200 , TraesCS2D02G491200 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G252000 , TraesCS7A02G416400 , TraesCS6B02G141300
Populus PNT58549 , PNT58550


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.004G257000 transmembrane 9 superfamily member, putative, expressed -
3 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
4 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
5 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
6 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
7 Sobic.001G409900 transporter, putative, expressed -
8 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
9 Sobic.001G217500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
10 Sobic.002G332100 expressed protein -
11 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
12 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
13 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
14 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
15 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
16 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
17 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
18 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
19 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
20 Sobic.002G214900 polygalacturonase, putative, expressed -


Gene co-expression network
sample Sobic010G253300 Sobic010G253300 Sobic001G031900 Sobic001G031900 Sobic010G253300--Sobic001G031900 Sobic004G257000 Sobic004G257000 Sobic010G253300--Sobic004G257000 Sobic006G058900 Sobic006G058900 Sobic010G253300--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic010G253300--Sobic004G202100 Sobic003G348800 Sobic003G348800 Sobic010G253300--Sobic003G348800 Sobic002G395000 Sobic002G395000 Sobic010G253300--Sobic002G395000 Sobic001G409900 Sobic001G409900 Sobic010G253300--Sobic001G409900 Sobic004G262300 Sobic004G262300 Sobic010G253300--Sobic004G262300 Sobic001G217500 Sobic001G217500 Sobic010G253300--Sobic001G217500 Sobic001G031900--Sobic006G058900 Sobic001G031900--Sobic004G202100 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic004G344800 Sobic004G344800 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic004G257000--Sobic001G217500 Sobic003G151600 Sobic003G151600 Sobic004G257000--Sobic003G151600 Sobic001G040100 Sobic001G040100 Sobic004G257000--Sobic001G040100 Sobic002G101300 Sobic002G101300 Sobic004G257000--Sobic002G101300 Sobic004G257000--Sobic001G031900 Sobic004G257000--Sobic010G253300 Sobic006G035900 Sobic006G035900 Sobic004G257000--Sobic006G035900 Sobic004G257000--Sobic003G348800 Sobic003G389000 Sobic003G389000 Sobic004G257000--Sobic003G389000 Sobic006G058900--Sobic001G031900 Sobic006G058900--Sobic001G458800 Sobic006G058900--Sobic004G202100 Sobic006G058900--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic006G058900--Sobic007G171500 Sobic002G309500 Sobic002G309500 Sobic006G058900--Sobic002G309500 Sobic006G058900--Sobic004G344800 Sobic003G034900 Sobic003G034900 Sobic006G058900--Sobic003G034900 Sobic003G185500 Sobic003G185500 Sobic006G058900--Sobic003G185500 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G202100--Sobic004G262300 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic004G202100--Sobic002G309500 Sobic004G297700 Sobic004G297700 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic001G338400 Sobic001G338400 Sobic003G348800--Sobic001G338400 Sobic001G281900 Sobic001G281900 Sobic003G348800--Sobic001G281900 Sobic002G342500 Sobic002G342500 Sobic003G348800--Sobic002G342500 Sobic001G230100 Sobic001G230100 Sobic003G348800--Sobic001G230100 Sobic001G220900 Sobic001G220900 Sobic003G348800--Sobic001G220900 Sobic004G160200 Sobic004G160200 Sobic003G348800--Sobic004G160200 Sobic001G109300 Sobic001G109300 Sobic003G348800--Sobic001G109300 Sobic003G348800--Sobic004G257000 Sobic008G150300 Sobic008G150300 Sobic003G348800--Sobic008G150300 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic001G073600 Sobic001G073600 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic002G214900 Sobic002G214900 Sobic001G409900--Sobic002G214900 Sobic006G263100 Sobic006G263100 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic002G362900 Sobic002G362900 Sobic001G409900--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500 Sobic004G262300--Sobic004G202100 Sobic001G060300 Sobic001G060300 Sobic004G262300--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic004G262300--Sobic001G342200 Sobic004G262300--Sobic001G031900 Sobic010G038700 Sobic010G038700 Sobic004G262300--Sobic010G038700 Sobic009G001900 Sobic009G001900 Sobic004G262300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic004G262300--Sobic004G066800 Sobic002G131600 Sobic002G131600 Sobic004G262300--Sobic002G131600 Sobic007G092100 Sobic007G092100 Sobic004G262300--Sobic007G092100 Sobic001G217500--Sobic004G257000 Sobic001G217500--Sobic001G031900 Sobic001G217500--Sobic002G395000 Sobic003G218400 Sobic003G218400 Sobic001G217500--Sobic003G218400 Sobic007G013900 Sobic007G013900 Sobic001G217500--Sobic007G013900 Sobic001G217500--Sobic004G170400 Sobic010G059300 Sobic010G059300 Sobic001G217500--Sobic010G059300 Sobic001G217500--Sobic002G078300 Sobic001G217500--Sobic006G058900
Octagon: transcription factors


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