Gene annotation
Transcriptome id Sobic.002G332100.1
Synonym Sb02g035830
Functional annotation expressed protein
UniProt C5XAV9
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61667 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os07g36410.1 : expressed protein
MaizeGDB (Corn) Zm00025a014863 , Zm00025a048332
Brachypodium -
Barley -
Wheat TraesCS2A02G213200 , TraesCS2D02G219100 , TraesCS2D02G219100
Populus -


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cDNA sequences
Sobic.002G332100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
2 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
3 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G342500 glycosyltransferase sugar-binding region containing DXD motif, putative, expressed -
5 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
6 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
7 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
8 Sobic.010G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
9 Sobic.010G253300 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor 19, putative, expressed -
10 Sobic.010G212200 synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
11 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
12 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
14 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G451901 - -
16 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
17 Sobic.002G321500 ras-related protein, putative, expressed K07976: Rab family, other
18 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
19 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
20 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -


Gene co-expression network
sample Sobic002G332100 Sobic002G332100 Sobic002G075500 Sobic002G075500 Sobic002G332100--Sobic002G075500 Sobic001G436100 Sobic001G436100 Sobic002G332100--Sobic001G436100 Sobic004G212100 Sobic004G212100 Sobic002G332100--Sobic004G212100 Sobic002G342500 Sobic002G342500 Sobic002G332100--Sobic002G342500 Sobic001G196100 Sobic001G196100 Sobic002G332100--Sobic001G196100 Sobic001G338400 Sobic001G338400 Sobic002G332100--Sobic001G338400 Sobic001G116000 Sobic001G116000 Sobic002G332100--Sobic001G116000 Sobic010G060600 Sobic010G060600 Sobic002G332100--Sobic010G060600 Sobic010G253300 Sobic010G253300 Sobic002G332100--Sobic010G253300 Sobic009G063400 Sobic009G063400 Sobic002G075500--Sobic009G063400 Sobic009G125900 Sobic009G125900 Sobic002G075500--Sobic009G125900 Sobic002G118700 Sobic002G118700 Sobic002G075500--Sobic002G118700 Sobic009G026101 Sobic009G026101 Sobic002G075500--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic007G180900 Sobic007G180900 Sobic002G075500--Sobic007G180900 Sobic003G254700 Sobic003G254700 Sobic002G075500--Sobic003G254700 Sobic006G156600 Sobic006G156600 Sobic002G075500--Sobic006G156600 Sobic001G436100--Sobic001G116000 Sobic001G436100--Sobic001G196100 Sobic009G194200 Sobic009G194200 Sobic001G436100--Sobic009G194200 Sobic001G026600 Sobic001G026600 Sobic001G436100--Sobic001G026600 Sobic004G331900 Sobic004G331900 Sobic001G436100--Sobic004G331900 Sobic001G436100--Sobic002G075500 Sobic001G313301 Sobic001G313301 Sobic001G436100--Sobic001G313301 Sobic004G333100 Sobic004G333100 Sobic001G436100--Sobic004G333100 Sobic003G319000 Sobic003G319000 Sobic001G436100--Sobic003G319000 Sobic002G367800 Sobic002G367800 Sobic004G212100--Sobic002G367800 Sobic001G011000 Sobic001G011000 Sobic004G212100--Sobic001G011000 Sobic009G041800 Sobic009G041800 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic002G342500--Sobic001G338400 Sobic005G074100 Sobic005G074100 Sobic002G342500--Sobic005G074100 Sobic001G145500 Sobic001G145500 Sobic002G342500--Sobic001G145500 Sobic003G348800 Sobic003G348800 Sobic002G342500--Sobic003G348800 Sobic001G322000 Sobic001G322000 Sobic002G342500--Sobic001G322000 Sobic006G179700 Sobic006G179700 Sobic002G342500--Sobic006G179700 Sobic007G013300 Sobic007G013300 Sobic002G342500--Sobic007G013300 Sobic007G161200 Sobic007G161200 Sobic002G342500--Sobic007G161200 Sobic003G053700 Sobic003G053700 Sobic002G342500--Sobic003G053700 Sobic001G196100--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic001G196100--Sobic007G044400 Sobic001G281900 Sobic001G281900 Sobic001G196100--Sobic001G281900 Sobic001G035400 Sobic001G035400 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic001G338400--Sobic003G348800 Sobic008G150300 Sobic008G150300 Sobic001G338400--Sobic008G150300 Sobic001G338400--Sobic001G281900 Sobic001G338400--Sobic001G145500 Sobic004G010900 Sobic004G010900 Sobic001G338400--Sobic004G010900 Sobic001G338400--Sobic001G490500 Sobic001G230100 Sobic001G230100 Sobic001G338400--Sobic001G230100 Sobic001G338400--Sobic002G342500 Sobic006G029000 Sobic006G029000 Sobic001G338400--Sobic006G029000 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic009G059500 Sobic009G059500 Sobic010G060600--Sobic009G059500 Sobic005G164700 Sobic005G164700 Sobic010G060600--Sobic005G164700 Sobic001G112700 Sobic001G112700 Sobic010G060600--Sobic001G112700 Sobic002G280700 Sobic002G280700 Sobic010G060600--Sobic002G280700 Sobic008G004100 Sobic008G004100 Sobic010G060600--Sobic008G004100 Sobic010G060600--Sobic002G332100 Sobic003G198500 Sobic003G198500 Sobic010G060600--Sobic003G198500 Sobic002G252000 Sobic002G252000 Sobic010G060600--Sobic002G252000 Sobic003G294100 Sobic003G294100 Sobic010G060600--Sobic003G294100 Sobic001G031900 Sobic001G031900 Sobic010G253300--Sobic001G031900 Sobic004G257000 Sobic004G257000 Sobic010G253300--Sobic004G257000 Sobic006G058900 Sobic006G058900 Sobic010G253300--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic010G253300--Sobic004G202100 Sobic010G253300--Sobic003G348800 Sobic002G395000 Sobic002G395000 Sobic010G253300--Sobic002G395000 Sobic001G409900 Sobic001G409900 Sobic010G253300--Sobic001G409900 Sobic004G262300 Sobic004G262300 Sobic010G253300--Sobic004G262300 Sobic001G217500 Sobic001G217500 Sobic010G253300--Sobic001G217500
Octagon: transcription factors


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