Gene annotation
Transcriptome id Sobic.004G212100.1
Synonym NFD5, Sb04g025740
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XXB5
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF515
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19520 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os02g39820.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021204
Brachypodium KQK00297
Barley HORVU6Hr1G056180.4 , HORVU6Hr1G056180.2 , HORVU6Hr1G056180.3 , HORVU6Hr1G056180.1
Wheat TraesCS6D02G202700 , TraesCS6B02G249200 , TraesCS6A02G219800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G212100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
3 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G070300 expressed protein -
6 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
7 Sobic.004G034300 transducin family protein, putative, expressed -
8 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
9 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
10 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
11 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
12 Sobic.002G295900 ribosomal protein S15 containing protein, expressed -
13 Sobic.008G072200 coatomer subunit delta, putative, expressed -
14 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
15 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
16 Sobic.004G002500 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
17 Sobic.001G214900 expressed protein -
18 Sobic.002G426400 OsLonP3 - Putative Lon protease homologue, expressed K08675: PRSS15, ATP-dependent Lon protease
19 Sobic.004G356300 expressed protein -
20 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'


Gene co-expression network
sample Sobic004G212100 Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic004G212100--Sobic002G367800 Sobic001G011000 Sobic001G011000 Sobic004G212100--Sobic001G011000 Sobic009G041800 Sobic009G041800 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic004G356300 Sobic004G356300 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G071100 Sobic002G071100 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic001G011000--Sobic002G070300 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic009G041800--Sobic004G212100 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic003G388900--Sobic002G367800 Sobic002G402500 Sobic002G402500 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic003G388900--Sobic001G413100 Sobic003G205400 Sobic003G205400 Sobic003G388900--Sobic003G205400 Sobic008G132200 Sobic008G132200 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic003G260600 Sobic003G260600 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic002G070600 Sobic002G070600 Sobic001G161700--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic001G161700--Sobic008G072200 Sobic001G161700--Sobic001G490500 Sobic001G012900 Sobic001G012900 Sobic001G161700--Sobic001G012900 Sobic001G023100 Sobic001G023100 Sobic001G161700--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic001G161700--Sobic003G346400 Sobic004G000100 Sobic004G000100 Sobic001G161700--Sobic004G000100 Sobic004G254800 Sobic004G254800 Sobic001G161700--Sobic004G254800 Sobic008G085700 Sobic008G085700 Sobic001G161700--Sobic008G085700 Sobic004G336300 Sobic004G336300 Sobic004G034300--Sobic004G336300 Sobic010G178600 Sobic010G178600 Sobic004G034300--Sobic010G178600 Sobic004G034300--Sobic002G070600 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic009G118900 Sobic009G118900 Sobic004G034300--Sobic009G118900 Sobic003G334700 Sobic003G334700 Sobic004G034300--Sobic003G334700 Sobic004G034300--Sobic004G212100 Sobic004G034300--Sobic001G012900 Sobic001G522000--Sobic002G367800 Sobic002G423500 Sobic002G423500 Sobic001G522000--Sobic002G423500 Sobic001G522000--Sobic001G490500 Sobic006G041100 Sobic006G041100 Sobic001G522000--Sobic006G041100 Sobic001G522000--Sobic003G388900 Sobic001G522000--Sobic003G205400 Sobic001G522000--Sobic002G402500 Sobic006G265600 Sobic006G265600 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic001G490500--Sobic001G161700 Sobic001G220900 Sobic001G220900 Sobic001G490500--Sobic001G220900 Sobic001G490500--Sobic001G117800 Sobic001G490500--Sobic002G070600 Sobic001G490500--Sobic008G072200 Sobic001G077900 Sobic001G077900 Sobic001G490500--Sobic001G077900 Sobic001G490500--Sobic001G522000 Sobic001G338400 Sobic001G338400 Sobic001G490500--Sobic001G338400 Sobic003G029600 Sobic003G029600 Sobic001G490500--Sobic003G029600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.