Gene annotation
Transcriptome id Sobic.004G002500.1,Sobic.004G002500.3
Synonym Sb04g000400
Functional annotation ribosomal protein, putative, expressed
UniProt A0A1Z5RK67 , A0A1Z5RKN3
Pfam PF03719 PF00333
Panther DB PTHR13718 PTHR13718:SF63
NCBI CDD KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5
KEGG Orthology K02988; RP-S5, MRPS5, small subunit ribosomal protein S5
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G64880 : Ribosomal protein S5 family protein
RAP-DB (Rice) LOC_Os02g01230.1,LOC_Os02g01230.2 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a018630
Brachypodium PNT65656 , KQJ92742
Barley HORVU7Hr1G115780.3 , HORVU7Hr1G115780.2 , HORVU7Hr1G115780.1 , HORVU7Hr1G115780.6 , HORVU7Hr1G115780.5 , HORVU7Hr1G115780.4
Wheat TraesCS7D02G509300 , TraesCS7A02G519600 , TraesCS7B02G435700
Populus PNT07275


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
2 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
3 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
4 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G214900 expressed protein -
7 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G356300 expressed protein -
9 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
10 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
12 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
13 Sobic.004G007700 pentatricopeptide, putative, expressed -
14 Sobic.010G161525 - -
15 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
16 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
17 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
18 Sobic.002G281600 protein of unknown function domain containing protein, expressed -
19 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
20 Sobic.004G174700 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3


Gene co-expression network
sample Sobic004G002500 Sobic004G002500 Sobic001G011000 Sobic001G011000 Sobic004G002500--Sobic001G011000 Sobic010G134100 Sobic010G134100 Sobic004G002500--Sobic010G134100 Sobic001G493400 Sobic001G493400 Sobic004G002500--Sobic001G493400 Sobic004G212100 Sobic004G212100 Sobic004G002500--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic004G002500--Sobic002G367800 Sobic001G214900 Sobic001G214900 Sobic004G002500--Sobic001G214900 Sobic003G388900 Sobic003G388900 Sobic004G002500--Sobic003G388900 Sobic004G356300 Sobic004G356300 Sobic004G002500--Sobic004G356300 Sobic003G396800 Sobic003G396800 Sobic004G002500--Sobic003G396800 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic002G071100 Sobic002G071100 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic002G070300 Sobic002G070300 Sobic001G011000--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic001G167500 Sobic001G167500 Sobic010G134100--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic010G134100--Sobic001G413100 Sobic001G176900 Sobic001G176900 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic010G134100--Sobic001G493400 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic001G493400--Sobic010G134100 Sobic001G493400--Sobic004G002500 Sobic001G493400--Sobic001G214900 Sobic001G493400--Sobic001G167500 Sobic001G493400--Sobic004G082700 Sobic007G108100 Sobic007G108100 Sobic001G493400--Sobic007G108100 Sobic006G254300 Sobic006G254300 Sobic001G493400--Sobic006G254300 Sobic001G228200 Sobic001G228200 Sobic001G493400--Sobic001G228200 Sobic001G371100 Sobic001G371100 Sobic001G493400--Sobic001G371100 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic004G212100--Sobic003G388900 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic001G060300 Sobic001G060300 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic003G205400 Sobic003G205400 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic002G402500 Sobic002G402500 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic003G388900--Sobic002G367800 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic003G388900--Sobic001G413100 Sobic003G388900--Sobic003G205400 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic004G356300--Sobic008G057900 Sobic004G356300--Sobic001G176900 Sobic004G356300--Sobic010G134100 Sobic004G356300--Sobic002G071100 Sobic001G143900 Sobic001G143900 Sobic003G396800--Sobic001G143900 Sobic009G228600 Sobic009G228600 Sobic003G396800--Sobic009G228600 Sobic009G063800 Sobic009G063800 Sobic003G396800--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic003G396800--Sobic002G182000 Sobic003G120700 Sobic003G120700 Sobic003G396800--Sobic003G120700 Sobic001G203600 Sobic001G203600 Sobic003G396800--Sobic001G203600 Sobic001G033600 Sobic001G033600 Sobic003G396800--Sobic001G033600 Sobic002G193500 Sobic002G193500 Sobic003G396800--Sobic002G193500 Sobic003G004800 Sobic003G004800 Sobic003G396800--Sobic003G004800
Octagon: transcription factors


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