Gene annotation
Transcriptome id Sobic.002G281600.1
Synonym Sb02g031450
Functional annotation protein of unknown function domain containing protein, expressed
UniProt C5X6X7
Pfam PF01918
Panther DB PTHR13516 PTHR13516:SF9
NCBI CDD KOG2567; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G76010 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os09g37006.2 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014472 , Zm00025a025146 , Zm00025a049478 , Zm00025a027522
Brachypodium KQJ91266 , PNT65039
Barley HORVU5Hr1G084510.5 , HORVU5Hr1G084510.4 , HORVU5Hr1G084510.7 , HORVU5Hr1G084510.6 , HORVU5Hr1G084510.1 , HORVU5Hr1G084510.3 , HORVU5Hr1G084510.2 , HORVU5Hr1G084510.9 , HORVU5Hr1G084510.8 , HORVU5Hr1G084510.11 , HORVU5Hr1G084510.10 , HORVU5Hr1G084510.13 , HORVU5Hr1G084510.12 , HORVU5Hr1G084510.15 , HORVU5Hr1G084510.14 , HORVU5Hr1G084510.17 , HORVU5Hr1G084510.16 , HORVU5Hr1G084510.19 , HORVU5Hr1G084510.18 , HORVU5Hr1G084510.24 , HORVU5Hr1G084510.20 , HORVU5Hr1G084510.21 , HORVU5Hr1G084510.22 , HORVU5Hr1G084510.23
Wheat TraesCS5B02G334600 , TraesCS5B02G334600 , TraesCS5A02G335400 , TraesCS5A02G335400 , TraesCS5A02G335400 , TraesCS5D02G340200
Populus PNT47294 , PNT47289 , PNT47288 , PNT47287 , PNT47286 , PNT47292 , PNT47293 , PNT47290 , PNT47291 , PNT47295


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cDNA sequences
Sobic.002G281600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
2 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
3 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
4 Sobic.001G529200 no apical meristem protein, putative, expressed -
5 Sobic.002G070300 expressed protein -
6 Sobic.004G035400 PFT1, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
7 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
8 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
9 Sobic.004G356300 expressed protein -
10 Sobic.001G486900 exostosin family protein, putative, expressed -
11 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
12 Sobic.003G348100 white-brown complex homolog protein, putative, expressed -
13 Sobic.010G089600 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@trehalose phosphatase, putative, expressed K01087: trehalose 6-phosphate phosphatase
14 Sobic.008G023300 stripe rust resistance protein Yr10, putative, expressed -
15 Sobic.004G129100 lipase class 3 family protein, putative, expressed -
16 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
17 Sobic.008G011800 DTW domain containing protein, putative, expressed -
18 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
19 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin


Gene co-expression network
sample Sobic002G281600 Sobic002G281600 Sobic001G011000 Sobic001G011000 Sobic002G281600--Sobic001G011000 Sobic001G543400 Sobic001G543400 Sobic002G281600--Sobic001G543400 Sobic002G153000 Sobic002G153000 Sobic002G281600--Sobic002G153000 Sobic001G529200 Sobic001G529200 Sobic002G281600--Sobic001G529200 Sobic002G070300 Sobic002G070300 Sobic002G281600--Sobic002G070300 Sobic004G035400 Sobic004G035400 Sobic002G281600--Sobic004G035400 Sobic002G186200 Sobic002G186200 Sobic002G281600--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic002G281600--Sobic004G261800 Sobic004G356300 Sobic004G356300 Sobic002G281600--Sobic004G356300 Sobic004G212100 Sobic004G212100 Sobic001G011000--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic001G011000--Sobic002G367800 Sobic002G071100 Sobic002G071100 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic001G011000--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G011000--Sobic009G041800 Sobic001G011000--Sobic002G281600 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic001G543400--Sobic002G153000 Sobic001G543400--Sobic002G070300 Sobic001G543400--Sobic008G057900 Sobic003G260600 Sobic003G260600 Sobic001G543400--Sobic003G260600 Sobic004G017900 Sobic004G017900 Sobic001G543400--Sobic004G017900 Sobic007G014700 Sobic007G014700 Sobic001G543400--Sobic007G014700 Sobic004G218600 Sobic004G218600 Sobic001G543400--Sobic004G218600 Sobic001G543400--Sobic004G261800 Sobic008G132200 Sobic008G132200 Sobic001G543400--Sobic008G132200 Sobic002G090500 Sobic002G090500 Sobic002G153000--Sobic002G090500 Sobic002G153000--Sobic001G543400 Sobic002G153000--Sobic004G218600 Sobic002G232400 Sobic002G232400 Sobic002G153000--Sobic002G232400 Sobic002G153000--Sobic002G070300 Sobic002G153000--Sobic008G057900 Sobic002G153000--Sobic004G261800 Sobic002G153000--Sobic001G011000 Sobic001G352800 Sobic001G352800 Sobic002G153000--Sobic001G352800 Sobic010G253200 Sobic010G253200 Sobic001G529200--Sobic010G253200 Sobic001G529200--Sobic002G186200 Sobic002G420100 Sobic002G420100 Sobic001G529200--Sobic002G420100 Sobic004G241300 Sobic004G241300 Sobic001G529200--Sobic004G241300 Sobic001G529200--Sobic004G261800 Sobic003G348100 Sobic003G348100 Sobic001G529200--Sobic003G348100 Sobic003G423700 Sobic003G423700 Sobic001G529200--Sobic003G423700 Sobic008G011800 Sobic008G011800 Sobic001G529200--Sobic008G011800 Sobic003G159700 Sobic003G159700 Sobic001G529200--Sobic003G159700 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic002G070300--Sobic001G543400 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic010G089600 Sobic010G089600 Sobic004G035400--Sobic010G089600 Sobic002G381400 Sobic002G381400 Sobic004G035400--Sobic002G381400 Sobic004G035400--Sobic004G241300 Sobic008G023300 Sobic008G023300 Sobic004G035400--Sobic008G023300 Sobic002G201700 Sobic002G201700 Sobic004G035400--Sobic002G201700 Sobic004G035400--Sobic010G253200 Sobic004G035400--Sobic004G261800 Sobic004G035400--Sobic002G186200 Sobic001G213666 Sobic001G213666 Sobic004G035400--Sobic001G213666 Sobic002G186200--Sobic004G261800 Sobic002G186200--Sobic003G423700 Sobic002G186200--Sobic010G253200 Sobic002G186200--Sobic002G420100 Sobic002G186200--Sobic004G241300 Sobic001G126800 Sobic001G126800 Sobic002G186200--Sobic001G126800 Sobic008G156600 Sobic008G156600 Sobic002G186200--Sobic008G156600 Sobic003G013700 Sobic003G013700 Sobic002G186200--Sobic003G013700 Sobic001G400000 Sobic001G400000 Sobic002G186200--Sobic001G400000 Sobic004G261800--Sobic003G013700 Sobic004G261800--Sobic002G186200 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic004G261800--Sobic002G420100 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic004G261800--Sobic003G423700 Sobic004G261800--Sobic008G156600 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic004G356300--Sobic002G090500 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic004G356300--Sobic010G134100 Sobic004G356300--Sobic002G071100
Octagon: transcription factors


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