Gene annotation
Transcriptome id Sobic.004G356300.1
Synonym PPR336, Sb04g038280
Functional annotation expressed protein
UniProt C5XWQ6
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF518
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61870 : pentatricopeptide repeat 336
RAP-DB (Rice) LOC_Os02g58300.1 : expressed protein
MaizeGDB (Corn) Zm00025a022668
Brachypodium -
Barley HORVU6Hr1G094400.1 , HORVU6Hr1G094400.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G007700 pentatricopeptide, putative, expressed -
2 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
3 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
4 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
6 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
7 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
9 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
10 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
12 Sobic.002G070300 expressed protein -
13 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
14 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
15 Sobic.008G011800 DTW domain containing protein, putative, expressed -
16 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
17 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
18 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
19 Sobic.001G413100 nucleotide binding protein, putative, expressed -
20 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5


Gene co-expression network
sample Sobic004G356300 Sobic004G356300 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic001G011000 Sobic001G011000 Sobic004G356300--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G356300--Sobic003G075200 Sobic002G367800 Sobic002G367800 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic008G057900 Sobic008G057900 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic004G356300--Sobic010G134100 Sobic002G071100 Sobic002G071100 Sobic004G356300--Sobic002G071100 Sobic004G007700--Sobic004G356300 Sobic010G018900 Sobic010G018900 Sobic004G007700--Sobic010G018900 Sobic004G007700--Sobic001G011000 Sobic004G007700--Sobic003G075200 Sobic004G007700--Sobic002G367800 Sobic010G080900 Sobic010G080900 Sobic004G007700--Sobic010G080900 Sobic010G002800 Sobic010G002800 Sobic004G007700--Sobic010G002800 Sobic007G140100 Sobic007G140100 Sobic004G007700--Sobic007G140100 Sobic001G167500 Sobic001G167500 Sobic004G007700--Sobic001G167500 Sobic004G212100 Sobic004G212100 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic002G070300 Sobic002G070300 Sobic001G011000--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic001G011000--Sobic008G057900 Sobic003G075200--Sobic004G356300 Sobic001G352800 Sobic001G352800 Sobic003G075200--Sobic001G352800 Sobic003G075200--Sobic008G057900 Sobic010G188900 Sobic010G188900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic003G075200--Sobic002G153000 Sobic003G075200--Sobic002G090500 Sobic003G075200--Sobic004G007700 Sobic006G153200 Sobic006G153200 Sobic003G075200--Sobic006G153200 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic003G388900 Sobic003G388900 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic002G090500--Sobic002G153000 Sobic002G232400 Sobic002G232400 Sobic002G090500--Sobic002G232400 Sobic002G090500--Sobic001G352800 Sobic002G090500--Sobic004G356300 Sobic002G090500--Sobic003G075200 Sobic004G218600 Sobic004G218600 Sobic002G090500--Sobic004G218600 Sobic002G090500--Sobic001G011000 Sobic001G543400 Sobic001G543400 Sobic002G090500--Sobic001G543400 Sobic002G090500--Sobic008G057900 Sobic008G057900--Sobic001G543400 Sobic008G057900--Sobic002G153000 Sobic008G057900--Sobic003G075200 Sobic008G057900--Sobic001G011000 Sobic008G057900--Sobic004G356300 Sobic002G186300 Sobic002G186300 Sobic008G057900--Sobic002G186300 Sobic008G057900--Sobic002G367800 Sobic002G217500 Sobic002G217500 Sobic008G057900--Sobic002G217500 Sobic008G057900--Sobic002G090500 Sobic001G176900--Sobic010G134100 Sobic001G176900--Sobic004G356300 Sobic001G413100 Sobic001G413100 Sobic001G176900--Sobic001G413100 Sobic001G176900--Sobic001G167500 Sobic001G176900--Sobic002G367800 Sobic003G388700 Sobic003G388700 Sobic001G176900--Sobic003G388700 Sobic004G184000 Sobic004G184000 Sobic001G176900--Sobic004G184000 Sobic001G176900--Sobic004G007700 Sobic001G176900--Sobic003G075200 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic002G071100--Sobic001G011000 Sobic001G380600 Sobic001G380600 Sobic002G071100--Sobic001G380600 Sobic002G071100--Sobic002G367800 Sobic003G202100 Sobic003G202100 Sobic002G071100--Sobic003G202100 Sobic001G304000 Sobic001G304000 Sobic002G071100--Sobic001G304000 Sobic002G071100--Sobic004G356300 Sobic002G071100--Sobic004G212100 Sobic002G071100--Sobic009G041800 Sobic002G071100--Sobic003G388900
Octagon: transcription factors


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