Gene annotation
Transcriptome id Sobic.002G090500.1,Sobic.002G090500.2
Synonym AtCRT1a, CRT1, Sb02g007480, CRT1a
Functional annotation calreticulin precursor protein, putative, expressed
UniProt A0A1B6QA33 , A0A1B6QA32
Pfam PF00262
Panther DB PTHR11073 PTHR11073:SF17 PTHR11073:SF17 PTHR11073
NCBI CDD KOG0674; Calreticulin
KEGG Orthology K08057; calreticulin
Gene Ontology GO:0005509; calcium ion binding GO:0005783endoplasmic reticulum GO:0006457protein folding GO:0006457protein folding GO:0005783endoplasmic reticulum GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G56340 : calreticulin 1a
RAP-DB (Rice) LOC_Os07g14270.3 : calreticulin precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a045502 , Zm00025a013606
Brachypodium KQK12323
Barley HORVU2Hr1G121990.8 , HORVU2Hr1G121990.4 , HORVU2Hr1G121990.5 , HORVU2Hr1G121990.6 , HORVU2Hr1G121990.7 , HORVU2Hr1G121990.1 , HORVU2Hr1G121990.2 , HORVU2Hr1G121990.3 , HORVU5Hr1G116590.5 , HORVU5Hr1G116590.4 , HORVU5Hr1G116590.1 , HORVU2Hr1G121990.9 , HORVU5Hr1G116590.3 , HORVU5Hr1G116590.2 , HORVU2Hr1G121990.10
Wheat TraesCS2B02G576100 , TraesCS2B02G576100 , TraesCS5B02G509400 , TraesCS5B02G510200 , TraesCS2D02G546500 , TraesCS2D02G546500 , TraesCS2D02G546500 , TraesCS4A02G364000 , TraesCS5B02G509400 , TraesCS2B02G576100 , TraesCS2A02G545600 , TraesCS2A02G545600 , TraesCS2A02G545600
Populus PNT34428 , PNT34475 , PNT34476 , PNT34430 , PNT34431 , PNT34432 , PNT06044 , PNT34429


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cDNA sequences
Sobic.002G090500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
2 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
3 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
4 Sobic.004G356300 expressed protein -
5 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
6 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
7 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
8 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
9 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
10 Sobic.002G297500 coiled-coil domain-containing protein 111, putative, expressed -
11 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
12 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
13 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G192900 expressed protein -
15 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
16 Sobic.003G266400 clathrin assembly protein, putative, expressed -
17 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
18 Sobic.001G323400 expressed protein -
19 Sobic.002G070300 expressed protein -
20 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A


Gene co-expression network
sample Sobic002G090500 Sobic002G090500 Sobic002G153000 Sobic002G153000 Sobic002G090500--Sobic002G153000 Sobic002G232400 Sobic002G232400 Sobic002G090500--Sobic002G232400 Sobic001G352800 Sobic001G352800 Sobic002G090500--Sobic001G352800 Sobic004G356300 Sobic004G356300 Sobic002G090500--Sobic004G356300 Sobic003G075200 Sobic003G075200 Sobic002G090500--Sobic003G075200 Sobic004G218600 Sobic004G218600 Sobic002G090500--Sobic004G218600 Sobic001G011000 Sobic001G011000 Sobic002G090500--Sobic001G011000 Sobic001G543400 Sobic001G543400 Sobic002G090500--Sobic001G543400 Sobic008G057900 Sobic008G057900 Sobic002G090500--Sobic008G057900 Sobic002G153000--Sobic002G090500 Sobic002G153000--Sobic001G543400 Sobic002G153000--Sobic004G218600 Sobic002G153000--Sobic002G232400 Sobic002G070300 Sobic002G070300 Sobic002G153000--Sobic002G070300 Sobic002G153000--Sobic008G057900 Sobic004G261800 Sobic004G261800 Sobic002G153000--Sobic004G261800 Sobic002G153000--Sobic001G011000 Sobic002G153000--Sobic001G352800 Sobic002G232400--Sobic002G153000 Sobic002G232400--Sobic002G090500 Sobic002G232400--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic002G232400--Sobic001G192700 Sobic002G268700 Sobic002G268700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic002G232400--Sobic004G218600 Sobic008G084100 Sobic008G084100 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic001G352800--Sobic002G232400 Sobic002G255400 Sobic002G255400 Sobic001G352800--Sobic002G255400 Sobic003G260600 Sobic003G260600 Sobic001G352800--Sobic003G260600 Sobic001G352800--Sobic003G075200 Sobic003G085500 Sobic003G085500 Sobic001G352800--Sobic003G085500 Sobic001G352800--Sobic002G090500 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic004G356300--Sobic003G075200 Sobic002G367800 Sobic002G367800 Sobic004G356300--Sobic002G367800 Sobic004G356300--Sobic002G090500 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic004G356300--Sobic010G134100 Sobic002G071100 Sobic002G071100 Sobic004G356300--Sobic002G071100 Sobic003G075200--Sobic004G356300 Sobic003G075200--Sobic001G352800 Sobic003G075200--Sobic008G057900 Sobic010G188900 Sobic010G188900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic003G075200--Sobic002G153000 Sobic003G075200--Sobic002G090500 Sobic003G075200--Sobic004G007700 Sobic006G153200 Sobic006G153200 Sobic003G075200--Sobic006G153200 Sobic004G218600--Sobic002G153000 Sobic001G457000 Sobic001G457000 Sobic004G218600--Sobic001G457000 Sobic002G352200 Sobic002G352200 Sobic004G218600--Sobic002G352200 Sobic004G218600--Sobic001G543400 Sobic004G218600--Sobic003G260600 Sobic004G218600--Sobic002G070300 Sobic004G218600--Sobic002G255400 Sobic003G049200 Sobic003G049200 Sobic004G218600--Sobic003G049200 Sobic007G119600 Sobic007G119600 Sobic004G218600--Sobic007G119600 Sobic004G212100 Sobic004G212100 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic001G011000--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic001G011000--Sobic002G153000 Sobic001G011000--Sobic008G057900 Sobic001G543400--Sobic002G153000 Sobic001G543400--Sobic002G070300 Sobic001G543400--Sobic008G057900 Sobic001G543400--Sobic003G260600 Sobic004G017900 Sobic004G017900 Sobic001G543400--Sobic004G017900 Sobic007G014700 Sobic007G014700 Sobic001G543400--Sobic007G014700 Sobic001G543400--Sobic004G218600 Sobic001G543400--Sobic004G261800 Sobic008G132200 Sobic008G132200 Sobic001G543400--Sobic008G132200 Sobic008G057900--Sobic001G543400 Sobic008G057900--Sobic002G153000 Sobic008G057900--Sobic003G075200 Sobic008G057900--Sobic001G011000 Sobic008G057900--Sobic004G356300 Sobic002G186300 Sobic002G186300 Sobic008G057900--Sobic002G186300 Sobic008G057900--Sobic002G367800 Sobic002G217500 Sobic002G217500 Sobic008G057900--Sobic002G217500 Sobic008G057900--Sobic002G090500
Octagon: transcription factors


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