Gene annotation
Transcriptome id Sobic.003G266400.1
Synonym Sb03g031930
Functional annotation clathrin assembly protein, putative, expressed
UniProt C5XHH1
Pfam PF07651
Panther DB PTHR22951 PTHR22951:SF25
NCBI CDD KOG0251; Clathrin assembly protein AP180 and related proteins, contain ENTH domain
KEGG Orthology -
Gene Ontology GO:0005543; phospholipid binding


Orthologs (automatic annotation)
TAIR AT2G01600 : ENTH/ANTH/VHS superfamily protein
RAP-DB (Rice) LOC_Os01g50010.1 : clathrin assembly protein, putative, expressed
MaizeGDB (Corn) Zm00025a044441 , Zm00025a027919 , Zm00025a036512
Brachypodium KQK09312 , KQK09311 , KQK05056
Barley HORVU1Hr1G078340.15 , HORVU1Hr1G078340.14 , HORVU1Hr1G078340.13 , HORVU1Hr1G078340.12 , HORVU1Hr1G078340.11 , HORVU1Hr1G078340.10 , HORVU1Hr1G078340.9 , HORVU1Hr1G078340.8 , HORVU1Hr1G078340.7 , HORVU1Hr1G078340.6 , HORVU1Hr1G078340.5 , HORVU1Hr1G078340.4 , HORVU1Hr1G078340.3 , HORVU1Hr1G078340.2 , HORVU1Hr1G078340.1
Wheat TraesCS1D02G375800 , TraesCS3A02G258900 , TraesCS1A02G369700 , TraesCS3D02G259000 , TraesCS3D02G259000 , TraesCS3B02G292000 , TraesCS3B02G292000 , TraesCS1B02G388800 , TraesCS1B02G388800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G364900 hemerythrin family protein, expressed -
2 Sobic.010G018500 expressed protein -
3 Sobic.002G111500 Fatty acyl-ACP thioesterases B FATB (At)(PubMedID : 27208977)@myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
4 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
5 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
6 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
7 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
8 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
9 Sobic.001G146000 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
10 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
11 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
12 Sobic.001G196600 OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
13 Sobic.002G192900 expressed protein -
14 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
15 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
16 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
17 Sobic.008G010600 plant viral response family protein, putative, expressed -
18 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
19 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
20 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase


Gene co-expression network
sample Sobic003G266400 Sobic003G266400 Sobic003G364900 Sobic003G364900 Sobic003G266400--Sobic003G364900 Sobic010G018500 Sobic010G018500 Sobic003G266400--Sobic010G018500 Sobic002G111500 Sobic002G111500 Sobic003G266400--Sobic002G111500 Sobic001G543400 Sobic001G543400 Sobic003G266400--Sobic001G543400 Sobic002G090500 Sobic002G090500 Sobic003G266400--Sobic002G090500 Sobic002G153000 Sobic002G153000 Sobic003G266400--Sobic002G153000 Sobic002G232400 Sobic002G232400 Sobic003G266400--Sobic002G232400 Sobic010G042600 Sobic010G042600 Sobic003G266400--Sobic010G042600 Sobic001G146000 Sobic001G146000 Sobic003G266400--Sobic001G146000 Sobic003G364900--Sobic003G266400 Sobic006G236800 Sobic006G236800 Sobic003G364900--Sobic006G236800 Sobic003G105500 Sobic003G105500 Sobic003G364900--Sobic003G105500 Sobic003G364900--Sobic010G018500 Sobic010G051100 Sobic010G051100 Sobic003G364900--Sobic010G051100 Sobic003G364900--Sobic002G232400 Sobic003G364900--Sobic002G090500 Sobic003G364900--Sobic010G042600 Sobic001G131600 Sobic001G131600 Sobic003G364900--Sobic001G131600 Sobic010G018500--Sobic001G146000 Sobic010G018500--Sobic002G232400 Sobic010G018500--Sobic003G266400 Sobic010G018500--Sobic001G543400 Sobic008G084100 Sobic008G084100 Sobic010G018500--Sobic008G084100 Sobic010G018500--Sobic002G153000 Sobic002G101300 Sobic002G101300 Sobic010G018500--Sobic002G101300 Sobic010G018500--Sobic010G042600 Sobic004G356300 Sobic004G356300 Sobic010G018500--Sobic004G356300 Sobic002G111500--Sobic003G266400 Sobic004G232700 Sobic004G232700 Sobic002G111500--Sobic004G232700 Sobic003G122200 Sobic003G122200 Sobic002G111500--Sobic003G122200 Sobic002G111500--Sobic010G018500 Sobic010G114000 Sobic010G114000 Sobic002G111500--Sobic010G114000 Sobic002G271300 Sobic002G271300 Sobic002G111500--Sobic002G271300 Sobic003G444200 Sobic003G444200 Sobic002G111500--Sobic003G444200 Sobic010G101600 Sobic010G101600 Sobic002G111500--Sobic010G101600 Sobic002G111500--Sobic001G543400 Sobic001G543400--Sobic002G153000 Sobic002G070300 Sobic002G070300 Sobic001G543400--Sobic002G070300 Sobic008G057900 Sobic008G057900 Sobic001G543400--Sobic008G057900 Sobic003G260600 Sobic003G260600 Sobic001G543400--Sobic003G260600 Sobic004G017900 Sobic004G017900 Sobic001G543400--Sobic004G017900 Sobic007G014700 Sobic007G014700 Sobic001G543400--Sobic007G014700 Sobic004G218600 Sobic004G218600 Sobic001G543400--Sobic004G218600 Sobic004G261800 Sobic004G261800 Sobic001G543400--Sobic004G261800 Sobic008G132200 Sobic008G132200 Sobic001G543400--Sobic008G132200 Sobic002G090500--Sobic002G153000 Sobic002G090500--Sobic002G232400 Sobic001G352800 Sobic001G352800 Sobic002G090500--Sobic001G352800 Sobic002G090500--Sobic004G356300 Sobic003G075200 Sobic003G075200 Sobic002G090500--Sobic003G075200 Sobic002G090500--Sobic004G218600 Sobic001G011000 Sobic001G011000 Sobic002G090500--Sobic001G011000 Sobic002G090500--Sobic001G543400 Sobic002G090500--Sobic008G057900 Sobic002G153000--Sobic002G090500 Sobic002G153000--Sobic001G543400 Sobic002G153000--Sobic004G218600 Sobic002G153000--Sobic002G232400 Sobic002G153000--Sobic002G070300 Sobic002G153000--Sobic008G057900 Sobic002G153000--Sobic004G261800 Sobic002G153000--Sobic001G011000 Sobic002G153000--Sobic001G352800 Sobic002G232400--Sobic002G153000 Sobic002G232400--Sobic002G090500 Sobic002G232400--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic002G232400--Sobic001G192700 Sobic002G268700 Sobic002G268700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic002G232400--Sobic004G218600 Sobic002G232400--Sobic008G084100 Sobic002G232400--Sobic010G018500 Sobic003G118100 Sobic003G118100 Sobic010G042600--Sobic003G118100 Sobic009G206500 Sobic009G206500 Sobic010G042600--Sobic009G206500 Sobic001G144200 Sobic001G144200 Sobic010G042600--Sobic001G144200 Sobic006G267500 Sobic006G267500 Sobic010G042600--Sobic006G267500 Sobic010G042600--Sobic003G266400 Sobic010G042600--Sobic010G018500 Sobic001G196000 Sobic001G196000 Sobic010G042600--Sobic001G196000 Sobic006G035600 Sobic006G035600 Sobic010G042600--Sobic006G035600 Sobic001G500400 Sobic001G500400 Sobic010G042600--Sobic001G500400 Sobic001G146000--Sobic010G018500 Sobic001G146000--Sobic003G266400 Sobic001G146000--Sobic002G111500 Sobic002G347400 Sobic002G347400 Sobic001G146000--Sobic002G347400 Sobic001G146000--Sobic008G057900 Sobic006G278100 Sobic006G278100 Sobic001G146000--Sobic006G278100 Sobic001G146000--Sobic008G084100 Sobic001G146000--Sobic003G444200 Sobic001G146000--Sobic001G131600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.