Gene annotation
Transcriptome id Sobic.001G146000.1
Synonym TUB8, Sb01g012740
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt C5WQE5
Pfam PF03953 PF00091
Panther DB PTHR11588 PTHR11588:SF134
NCBI CDD -
KEGG Orthology K07375; tubulin beta
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT5G23860 : tubulin beta 8
RAP-DB (Rice) LOC_Os03g45920.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000132 , Zm00025a030432 , Zm00025a012119 , Zm00025a037439 , Zm00025a024856 , Zm00025a039825 , Zm00025a008433 , Zm00025a024200 , Zm00025a001989 , Zm00025a008427 , Zm00025a016660 , Zm00025a035181 , Zm00025a004646 , Zm00025a036766 , Zm00025a007533 , Zm00025a017188 , Zm00025a027156 , Zm00025a014491 , Zm00025a018766 , Zm00025a019054 , Zm00025a051791 , Zm00025a008163
Brachypodium KQJ93503 , KQK12908 , KQK17085 , KQK13880 , KQK24113 , KQK06257 , KQK03976 , KQK05638
Barley HORVU3Hr1G078940.3 , HORVU3Hr1G078940.2 , HORVU3Hr1G078940.1 , HORVU3Hr1G078940.7 , HORVU3Hr1G078940.6 , HORVU3Hr1G078940.5 , HORVU3Hr1G078940.4 , HORVU1Hr1G068170.1 , HORVU1Hr1G068170.3 , HORVU1Hr1G068170.2 , HORVU0Hr1G026030.4 , HORVU0Hr1G026030.3 , HORVU0Hr1G026030.2 , HORVU7Hr1G059990.1 , HORVU1Hr1G064870.4 , HORVU1Hr1G064870.5 , HORVU1Hr1G064870.6 , HORVU1Hr1G064870.7 , HORVU1Hr1G064870.1 , HORVU1Hr1G064870.2 , HORVU1Hr1G064870.3 , HORVU1Hr1G064870.8 , HORVU1Hr1G064870.9 , HORVU4Hr1G087740.1 , HORVU4Hr1G087740.3 , HORVU4Hr1G087740.4 , HORVU4Hr1G002530.1 , HORVU4Hr1G002530.2 , HORVU4Hr1G002530.3 , HORVU4Hr1G002530.4 , HORVU4Hr1G002530.5 , HORVU4Hr1G002530.6 , HORVU4Hr1G087740.5 , HORVU4Hr1G087740.2 , HORVU5Hr1G100900.1 , HORVU5Hr1G100900.2 , HORVU5Hr1G100900.5 , HORVU5Hr1G100900.4 , HORVU5Hr1G100900.6 , HORVU7Hr1G107100.4 , HORVU7Hr1G107100.5 , HORVU7Hr1G107100.2 , HORVU7Hr1G107100.3 , HORVU7Hr1G107100.1 , HORVU4Hr1G002530.7 , HORVU6Hr1G027620.5 , HORVU6Hr1G027620.4 , HORVU6Hr1G027620.3 , HORVU6Hr1G027620.2 , HORVU6Hr1G027620.1
Wheat TraesCS4D02G015400 , TraesCS7A02G466600 , TraesCS4B02G017100 , TraesCS3B02G363500 , TraesCS6D02G130500 , TraesCS6D02G130500 , TraesCS4A02G296600 , TraesCS1B02G320800 , TraesCS1A02G309700 , TraesCS5A02G416400 , TraesCS5A02G416400 , TraesCS1D02G258800 , TraesCS1B02G269400 , TraesCS5D02G424100 , TraesCS6B02G169300 , TraesCS6B02G169300 , TraesCS4B02G366500 , TraesCS1A02G258800 , TraesCSU02G137900 , TraesCS5B02G418700 , TraesCS5A02G534300 , TraesCS3D02G326900 , TraesCS1D02G309200 , TraesCS7D02G454200 , TraesCS2A02G437800
Populus -


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cDNA sequences
Sobic.001G146000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018500 expressed protein -
2 Sobic.003G266400 clathrin assembly protein, putative, expressed -
3 Sobic.002G111500 Fatty acyl-ACP thioesterases B FATB (At)(PubMedID : 27208977)@myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
4 Sobic.002G347400 expressed protein -
5 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
6 Sobic.006G278100 expressed protein -
7 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.003G444200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
9 Sobic.001G131600 expressed protein -
10 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
11 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
12 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
13 Sobic.001G401600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
14 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
15 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
16 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
17 Sobic.004G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed -
18 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
19 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other


Gene co-expression network
sample Sobic001G146000 Sobic001G146000 Sobic010G018500 Sobic010G018500 Sobic001G146000--Sobic010G018500 Sobic003G266400 Sobic003G266400 Sobic001G146000--Sobic003G266400 Sobic002G111500 Sobic002G111500 Sobic001G146000--Sobic002G111500 Sobic002G347400 Sobic002G347400 Sobic001G146000--Sobic002G347400 Sobic008G057900 Sobic008G057900 Sobic001G146000--Sobic008G057900 Sobic006G278100 Sobic006G278100 Sobic001G146000--Sobic006G278100 Sobic008G084100 Sobic008G084100 Sobic001G146000--Sobic008G084100 Sobic003G444200 Sobic003G444200 Sobic001G146000--Sobic003G444200 Sobic001G131600 Sobic001G131600 Sobic001G146000--Sobic001G131600 Sobic010G018500--Sobic001G146000 Sobic002G232400 Sobic002G232400 Sobic010G018500--Sobic002G232400 Sobic010G018500--Sobic003G266400 Sobic001G543400 Sobic001G543400 Sobic010G018500--Sobic001G543400 Sobic010G018500--Sobic008G084100 Sobic002G153000 Sobic002G153000 Sobic010G018500--Sobic002G153000 Sobic002G101300 Sobic002G101300 Sobic010G018500--Sobic002G101300 Sobic010G042600 Sobic010G042600 Sobic010G018500--Sobic010G042600 Sobic004G356300 Sobic004G356300 Sobic010G018500--Sobic004G356300 Sobic003G364900 Sobic003G364900 Sobic003G266400--Sobic003G364900 Sobic003G266400--Sobic010G018500 Sobic003G266400--Sobic002G111500 Sobic003G266400--Sobic001G543400 Sobic002G090500 Sobic002G090500 Sobic003G266400--Sobic002G090500 Sobic003G266400--Sobic002G153000 Sobic003G266400--Sobic002G232400 Sobic003G266400--Sobic010G042600 Sobic003G266400--Sobic001G146000 Sobic002G111500--Sobic003G266400 Sobic004G232700 Sobic004G232700 Sobic002G111500--Sobic004G232700 Sobic003G122200 Sobic003G122200 Sobic002G111500--Sobic003G122200 Sobic002G111500--Sobic010G018500 Sobic010G114000 Sobic010G114000 Sobic002G111500--Sobic010G114000 Sobic002G271300 Sobic002G271300 Sobic002G111500--Sobic002G271300 Sobic002G111500--Sobic003G444200 Sobic010G101600 Sobic010G101600 Sobic002G111500--Sobic010G101600 Sobic002G111500--Sobic001G543400 Sobic007G173000 Sobic007G173000 Sobic002G347400--Sobic007G173000 Sobic002G347400--Sobic001G146000 Sobic002G347400--Sobic008G084100 Sobic003G394100 Sobic003G394100 Sobic002G347400--Sobic003G394100 Sobic010G277000 Sobic010G277000 Sobic002G347400--Sobic010G277000 Sobic004G203900 Sobic004G203900 Sobic002G347400--Sobic004G203900 Sobic001G107200 Sobic001G107200 Sobic002G347400--Sobic001G107200 Sobic003G442300 Sobic003G442300 Sobic002G347400--Sobic003G442300 Sobic001G051300 Sobic001G051300 Sobic002G347400--Sobic001G051300 Sobic008G057900--Sobic001G543400 Sobic008G057900--Sobic002G153000 Sobic003G075200 Sobic003G075200 Sobic008G057900--Sobic003G075200 Sobic001G011000 Sobic001G011000 Sobic008G057900--Sobic001G011000 Sobic008G057900--Sobic004G356300 Sobic002G186300 Sobic002G186300 Sobic008G057900--Sobic002G186300 Sobic002G367800 Sobic002G367800 Sobic008G057900--Sobic002G367800 Sobic002G217500 Sobic002G217500 Sobic008G057900--Sobic002G217500 Sobic008G057900--Sobic002G090500 Sobic007G150800 Sobic007G150800 Sobic006G278100--Sobic007G150800 Sobic001G107100 Sobic001G107100 Sobic006G278100--Sobic001G107100 Sobic002G128800 Sobic002G128800 Sobic006G278100--Sobic002G128800 Sobic003G250700 Sobic003G250700 Sobic006G278100--Sobic003G250700 Sobic009G232200 Sobic009G232200 Sobic006G278100--Sobic009G232200 Sobic002G338400 Sobic002G338400 Sobic006G278100--Sobic002G338400 Sobic006G278100--Sobic003G122200 Sobic006G191700 Sobic006G191700 Sobic006G278100--Sobic006G191700 Sobic001G261549 Sobic001G261549 Sobic006G278100--Sobic001G261549 Sobic008G084100--Sobic010G277000 Sobic001G035400 Sobic001G035400 Sobic008G084100--Sobic001G035400 Sobic003G238500 Sobic003G238500 Sobic008G084100--Sobic003G238500 Sobic001G073600 Sobic001G073600 Sobic008G084100--Sobic001G073600 Sobic007G048700 Sobic007G048700 Sobic008G084100--Sobic007G048700 Sobic001G370700 Sobic001G370700 Sobic008G084100--Sobic001G370700 Sobic001G413100 Sobic001G413100 Sobic008G084100--Sobic001G413100 Sobic008G084100--Sobic002G232400 Sobic006G203900 Sobic006G203900 Sobic008G084100--Sobic006G203900 Sobic006G102900 Sobic006G102900 Sobic003G444200--Sobic006G102900 Sobic001G401600 Sobic001G401600 Sobic003G444200--Sobic001G401600 Sobic009G189200 Sobic009G189200 Sobic003G444200--Sobic009G189200 Sobic003G444200--Sobic010G101600 Sobic010G089500 Sobic010G089500 Sobic003G444200--Sobic010G089500 Sobic003G444200--Sobic002G232400 Sobic003G444200--Sobic002G271300 Sobic003G444200--Sobic008G084100 Sobic003G444200--Sobic002G111500 Sobic001G131600--Sobic009G189200 Sobic002G350400 Sobic002G350400 Sobic001G131600--Sobic002G350400 Sobic001G131600--Sobic003G122200 Sobic001G131600--Sobic006G102900 Sobic005G047100 Sobic005G047100 Sobic001G131600--Sobic005G047100 Sobic004G285900 Sobic004G285900 Sobic001G131600--Sobic004G285900 Sobic003G135400 Sobic003G135400 Sobic001G131600--Sobic003G135400 Sobic001G131600--Sobic002G111500 Sobic001G131600--Sobic003G364900
Octagon: transcription factors


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