Gene annotation
Transcriptome id Sobic.001G196600.1
Synonym Sb01g017300
Functional annotation OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
UniProt A0A1B6QJV2
Pfam PF05577
Panther DB PTHR11010 PTHR11010:SF42
NCBI CDD KOG2182; Hydrolytic enzymes of the alpha/beta hydrolase fold
KEGG Orthology -
Gene Ontology GO:0008236; serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G36195 : Serine carboxypeptidase S28 family protein
RAP-DB (Rice) LOC_Os10g36780.1 : OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a017437
Brachypodium KQJ97408
Barley HORVU1Hr1G047300.9 , HORVU1Hr1G047300.8 , HORVU1Hr1G047300.3 , HORVU1Hr1G047300.2 , HORVU1Hr1G047300.5 , HORVU1Hr1G047300.4 , HORVU1Hr1G047300.15 , HORVU1Hr1G047300.14 , HORVU1Hr1G047300.11 , HORVU1Hr1G047300.10 , HORVU1Hr1G047300.13 , HORVU1Hr1G047300.12
Wheat TraesCS1A02G178200 , TraesCS1A02G178200 , TraesCS1A02G178200 , TraesCS1D02G176700 , TraesCS1D02G176700 , TraesCS1B02G202100 , TraesCS1B02G202100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G196600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
2 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
3 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
4 Sobic.007G116500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
5 Sobic.004G028900 expressed protein -
6 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
7 Sobic.003G266400 clathrin assembly protein, putative, expressed -
8 Sobic.001G154300 DNA binding protein, putative, expressed -
9 Sobic.002G192900 expressed protein -
10 Sobic.003G364900 hemerythrin family protein, expressed -
11 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
12 Sobic.010G030200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@homeobox associated leucine zipper, putative, expressed -
13 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
14 Sobic.001G529200 no apical meristem protein, putative, expressed -
15 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
16 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
17 Sobic.004G017500 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.008G163900 OsFBX358 - F-box domain containing protein, expressed -
19 Sobic.001G162400 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
20 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -


Gene co-expression network
sample Sobic001G196600 Sobic001G196600 Sobic003G159700 Sobic003G159700 Sobic001G196600--Sobic003G159700 Sobic007G111300 Sobic007G111300 Sobic001G196600--Sobic007G111300 Sobic010G253200 Sobic010G253200 Sobic001G196600--Sobic010G253200 Sobic007G116500 Sobic007G116500 Sobic001G196600--Sobic007G116500 Sobic004G028900 Sobic004G028900 Sobic001G196600--Sobic004G028900 Sobic008G104000 Sobic008G104000 Sobic001G196600--Sobic008G104000 Sobic003G266400 Sobic003G266400 Sobic001G196600--Sobic003G266400 Sobic001G154300 Sobic001G154300 Sobic001G196600--Sobic001G154300 Sobic002G192900 Sobic002G192900 Sobic001G196600--Sobic002G192900 Sobic003G159700--Sobic007G111300 Sobic002G070300 Sobic002G070300 Sobic003G159700--Sobic002G070300 Sobic001G323400 Sobic001G323400 Sobic003G159700--Sobic001G323400 Sobic002G153000 Sobic002G153000 Sobic003G159700--Sobic002G153000 Sobic002G308000 Sobic002G308000 Sobic003G159700--Sobic002G308000 Sobic003G159700--Sobic002G192900 Sobic001G011000 Sobic001G011000 Sobic003G159700--Sobic001G011000 Sobic001G529200 Sobic001G529200 Sobic003G159700--Sobic001G529200 Sobic003G159700--Sobic010G253200 Sobic007G111300--Sobic003G159700 Sobic007G111300--Sobic002G308000 Sobic002G193500 Sobic002G193500 Sobic007G111300--Sobic002G193500 Sobic010G182000 Sobic010G182000 Sobic007G111300--Sobic010G182000 Sobic007G111300--Sobic008G104000 Sobic003G049200 Sobic003G049200 Sobic007G111300--Sobic003G049200 Sobic002G392400 Sobic002G392400 Sobic007G111300--Sobic002G392400 Sobic007G111300--Sobic002G070300 Sobic003G423700 Sobic003G423700 Sobic007G111300--Sobic003G423700 Sobic002G420100 Sobic002G420100 Sobic010G253200--Sobic002G420100 Sobic004G241300 Sobic004G241300 Sobic010G253200--Sobic004G241300 Sobic010G253200--Sobic003G423700 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic002G186200 Sobic002G186200 Sobic010G253200--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic010G253200--Sobic002G308000 Sobic009G187700 Sobic009G187700 Sobic007G116500--Sobic009G187700 Sobic002G007500 Sobic002G007500 Sobic007G116500--Sobic002G007500 Sobic001G530700 Sobic001G530700 Sobic007G116500--Sobic001G530700 Sobic009G180300 Sobic009G180300 Sobic007G116500--Sobic009G180300 Sobic007G116500--Sobic004G028900 Sobic007G116500--Sobic001G196600 Sobic007G116500--Sobic001G154300 Sobic004G017500 Sobic004G017500 Sobic007G116500--Sobic004G017500 Sobic003G347400 Sobic003G347400 Sobic007G116500--Sobic003G347400 Sobic004G028900--Sobic007G116500 Sobic004G028900--Sobic001G196600 Sobic001G023500 Sobic001G023500 Sobic004G028900--Sobic001G023500 Sobic005G055600 Sobic005G055600 Sobic004G028900--Sobic005G055600 Sobic003G098100 Sobic003G098100 Sobic004G028900--Sobic003G098100 Sobic003G409600 Sobic003G409600 Sobic004G028900--Sobic003G409600 Sobic004G341300 Sobic004G341300 Sobic004G028900--Sobic004G341300 Sobic001G285200 Sobic001G285200 Sobic004G028900--Sobic001G285200 Sobic004G028900--Sobic004G017500 Sobic008G104000--Sobic003G423700 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic001G126800 Sobic001G126800 Sobic008G104000--Sobic001G126800 Sobic001G248400 Sobic001G248400 Sobic008G104000--Sobic001G248400 Sobic008G156600 Sobic008G156600 Sobic008G104000--Sobic008G156600 Sobic008G171900 Sobic008G171900 Sobic008G104000--Sobic008G171900 Sobic003G364900 Sobic003G364900 Sobic003G266400--Sobic003G364900 Sobic010G018500 Sobic010G018500 Sobic003G266400--Sobic010G018500 Sobic002G111500 Sobic002G111500 Sobic003G266400--Sobic002G111500 Sobic001G543400 Sobic001G543400 Sobic003G266400--Sobic001G543400 Sobic002G090500 Sobic002G090500 Sobic003G266400--Sobic002G090500 Sobic003G266400--Sobic002G153000 Sobic002G232400 Sobic002G232400 Sobic003G266400--Sobic002G232400 Sobic010G042600 Sobic010G042600 Sobic003G266400--Sobic010G042600 Sobic001G146000 Sobic001G146000 Sobic003G266400--Sobic001G146000 Sobic001G381500 Sobic001G381500 Sobic001G154300--Sobic001G381500 Sobic004G328300 Sobic004G328300 Sobic001G154300--Sobic004G328300 Sobic001G361200 Sobic001G361200 Sobic001G154300--Sobic001G361200 Sobic001G154300--Sobic001G023500 Sobic001G154300--Sobic002G192900 Sobic004G306100 Sobic004G306100 Sobic001G154300--Sobic004G306100 Sobic001G154300--Sobic001G248400 Sobic001G154300--Sobic002G308000 Sobic006G127200 Sobic006G127200 Sobic001G154300--Sobic006G127200 Sobic002G192900--Sobic002G308000 Sobic010G188900 Sobic010G188900 Sobic002G192900--Sobic010G188900 Sobic006G095000 Sobic006G095000 Sobic002G192900--Sobic006G095000 Sobic002G192900--Sobic001G361200 Sobic002G390800 Sobic002G390800 Sobic002G192900--Sobic002G390800 Sobic003G184300 Sobic003G184300 Sobic002G192900--Sobic003G184300 Sobic004G064600 Sobic004G064600 Sobic002G192900--Sobic004G064600 Sobic002G192900--Sobic001G323400 Sobic002G192900--Sobic001G248400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.