Gene annotation
Transcriptome id Sobic.004G017500.3,Sobic.004G017500.2,Sobic.004G017500.1
Synonym AMS, Sb04g001650
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A194YNA4
Pfam PF00010
Panther DB PTHR31945 PTHR31945:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16910 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g02820.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034907
Brachypodium KQJ92966 , KQJ92964 , KQJ92965 , PNT65748 , PNT65749 , PNT65751 , PNT65750
Barley HORVU6Hr1G012730.1 , HORVU6Hr1G012760.1
Wheat TraesCS6A02G071200 , TraesCS6D02G069400 , TraesCS6B02G095700 , TraesCS6D02G069300 , TraesCS6B02G095600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G163900 OsFBX358 - F-box domain containing protein, expressed -
2 Sobic.002G007500 3-5 exonuclease domain-containing protein, putative, expressed -
3 Sobic.009G180300 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
4 Sobic.001G359000 expressed protein -
5 Sobic.006G067300 OsFBX103 - F-box domain containing protein, expressed -
6 Sobic.009G168100 expressed protein -
7 Sobic.004G218100 Protein octadecanal decarbonylase CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
8 Sobic.006G015700 expressed protein -
9 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
10 Sobic.009G187700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
11 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
12 Sobic.010G090000 syntaxin, putative, expressed K08488: syntaxin 7
13 Sobic.008G057500 Aldehyde dehydrogenase 3 H1(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
14 Sobic.003G098100 aquaporin protein, putative, expressed K09874: aquaporin NIP
15 Sobic.002G121100 OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
16 Sobic.009G153400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
17 Sobic.003G377300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.003G164300 cullin, putative, expressed K03347: CUL1, cullin 1
19 Sobic.003G102100 expressed protein -
20 Sobic.003G347400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@gp176, putative, expressed -


Gene co-expression network
sample Sobic004G017500 Sobic004G017500 Sobic008G163900 Sobic008G163900 Sobic004G017500--Sobic008G163900 Sobic002G007500 Sobic002G007500 Sobic004G017500--Sobic002G007500 Sobic009G180300 Sobic009G180300 Sobic004G017500--Sobic009G180300 Sobic001G359000 Sobic001G359000 Sobic004G017500--Sobic001G359000 Sobic006G067300 Sobic006G067300 Sobic004G017500--Sobic006G067300 Sobic009G168100 Sobic009G168100 Sobic004G017500--Sobic009G168100 Sobic004G218100 Sobic004G218100 Sobic004G017500--Sobic004G218100 Sobic006G015700 Sobic006G015700 Sobic004G017500--Sobic006G015700 Sobic008G140600 Sobic008G140600 Sobic004G017500--Sobic008G140600 Sobic008G163900--Sobic004G017500 Sobic008G163900--Sobic002G007500 Sobic008G163900--Sobic006G015700 Sobic008G163900--Sobic009G180300 Sobic010G090000 Sobic010G090000 Sobic008G163900--Sobic010G090000 Sobic010G261800 Sobic010G261800 Sobic008G163900--Sobic010G261800 Sobic008G163900--Sobic006G067300 Sobic002G121100 Sobic002G121100 Sobic008G163900--Sobic002G121100 Sobic003G180700 Sobic003G180700 Sobic008G163900--Sobic003G180700 Sobic002G007500--Sobic008G163900 Sobic002G007500--Sobic009G180300 Sobic002G007500--Sobic004G017500 Sobic002G007500--Sobic006G067300 Sobic002G007500--Sobic002G121100 Sobic008G057500 Sobic008G057500 Sobic002G007500--Sobic008G057500 Sobic010G043300 Sobic010G043300 Sobic002G007500--Sobic010G043300 Sobic004G089400 Sobic004G089400 Sobic002G007500--Sobic004G089400 Sobic009G187700 Sobic009G187700 Sobic002G007500--Sobic009G187700 Sobic009G180300--Sobic009G187700 Sobic009G180300--Sobic006G067300 Sobic009G180300--Sobic002G007500 Sobic009G180300--Sobic004G089400 Sobic005G006701 Sobic005G006701 Sobic009G180300--Sobic005G006701 Sobic003G062900 Sobic003G062900 Sobic009G180300--Sobic003G062900 Sobic009G180300--Sobic008G057500 Sobic002G260100 Sobic002G260100 Sobic009G180300--Sobic002G260100 Sobic004G149200 Sobic004G149200 Sobic009G180300--Sobic004G149200 Sobic004G149500 Sobic004G149500 Sobic001G359000--Sobic004G149500 Sobic002G158401 Sobic002G158401 Sobic001G359000--Sobic002G158401 Sobic004G158600 Sobic004G158600 Sobic001G359000--Sobic004G158600 Sobic001G359000--Sobic009G168100 Sobic006G014632 Sobic006G014632 Sobic001G359000--Sobic006G014632 Sobic001G359000--Sobic010G090000 Sobic003G177600 Sobic003G177600 Sobic001G359000--Sobic003G177600 Sobic001G359000--Sobic008G163900 Sobic003G102100 Sobic003G102100 Sobic001G359000--Sobic003G102100 Sobic006G067300--Sobic005G006701 Sobic003G164300 Sobic003G164300 Sobic006G067300--Sobic003G164300 Sobic006G067300--Sobic004G089400 Sobic006G067300--Sobic010G043300 Sobic006G067300--Sobic009G180300 Sobic006G067300--Sobic004G149200 Sobic007G010350 Sobic007G010350 Sobic006G067300--Sobic007G010350 Sobic006G067300--Sobic008G057500 Sobic001G092700 Sobic001G092700 Sobic006G067300--Sobic001G092700 Sobic009G168100--Sobic008G140600 Sobic009G168100--Sobic001G359000 Sobic005G045800 Sobic005G045800 Sobic009G168100--Sobic005G045800 Sobic008G073500 Sobic008G073500 Sobic009G168100--Sobic008G073500 Sobic009G168100--Sobic010G090000 Sobic003G376900 Sobic003G376900 Sobic009G168100--Sobic003G376900 Sobic003G377300 Sobic003G377300 Sobic009G168100--Sobic003G377300 Sobic009G168100--Sobic003G177600 Sobic001G385300 Sobic001G385300 Sobic009G168100--Sobic001G385300 Sobic004G218100--Sobic009G187700 Sobic004G218100--Sobic009G180300 Sobic007G068700 Sobic007G068700 Sobic004G218100--Sobic007G068700 Sobic010G195800 Sobic010G195800 Sobic004G218100--Sobic010G195800 Sobic001G266600 Sobic001G266600 Sobic004G218100--Sobic001G266600 Sobic003G098100 Sobic003G098100 Sobic004G218100--Sobic003G098100 Sobic007G162200 Sobic007G162200 Sobic004G218100--Sobic007G162200 Sobic009G048600 Sobic009G048600 Sobic004G218100--Sobic009G048600 Sobic004G218100--Sobic002G007500 Sobic006G124500 Sobic006G124500 Sobic006G015700--Sobic006G124500 Sobic007G083500 Sobic007G083500 Sobic006G015700--Sobic007G083500 Sobic009G067100 Sobic009G067100 Sobic006G015700--Sobic009G067100 Sobic006G018000 Sobic006G018000 Sobic006G015700--Sobic006G018000 Sobic002G298500 Sobic002G298500 Sobic006G015700--Sobic002G298500 Sobic002G123400 Sobic002G123400 Sobic006G015700--Sobic002G123400 Sobic006G015700--Sobic003G180700 Sobic001G355300 Sobic001G355300 Sobic006G015700--Sobic001G355300 Sobic003G354850 Sobic003G354850 Sobic006G015700--Sobic003G354850 Sobic008G140600--Sobic003G377300 Sobic008G140600--Sobic009G168100 Sobic008G140600--Sobic003G102100 Sobic008G140600--Sobic010G090000 Sobic008G140600--Sobic005G045800 Sobic008G104000 Sobic008G104000 Sobic008G140600--Sobic008G104000 Sobic007G141600 Sobic007G141600 Sobic008G140600--Sobic007G141600 Sobic008G140600--Sobic010G261800 Sobic002G322700 Sobic002G322700 Sobic008G140600--Sobic002G322700
Octagon: transcription factors


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