Gene annotation
| Transcriptome id | Sobic.009G187700.1 |
|---|---|
| Synonym | Gretchen Hagen3, SbGH3-15, Sb09g024710, GH3.6, DFL1 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments" (PubMedID : 20499123) OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed |
| UniProt | C5Z0F7 |
| Pfam | PF03321 |
| Panther DB | PTHR31901 PTHR31901:SF2 |
| NCBI CDD | - |
| KEGG Orthology | K14487; auxin responsive GH3 gene family |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G54510 : Auxin-responsive GH3 family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g42150.1 : OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed |
| MaizeGDB (Corn) | Zm00025a015082 , Zm00025a027255 , Zm00025a037889 , Zm00025a002969 , Zm00025a048626 |
| Brachypodium | KQK10103 , KQK09904 , KQK05547 |
| Barley | HORVU1Hr1G066340.10 , HORVU1Hr1G066340.8 , HORVU2Hr1G034670.4 , HORVU2Hr1G034670.5 , HORVU2Hr1G034670.1 , HORVU2Hr1G034670.3 , HORVU2Hr1G034670.2 , HORVU1Hr1G066340.4 , HORVU1Hr1G066340.5 , HORVU1Hr1G066340.6 , HORVU1Hr1G066340.7 , HORVU1Hr1G066340.1 , HORVU1Hr1G066340.2 , HORVU1Hr1G066340.3 , HORVU3Hr1G077360.1 , HORVU3Hr1G077360.6 , HORVU1Hr1G066340.9 , HORVU3Hr1G077360.4 , HORVU3Hr1G077360.5 |
| Wheat | TraesCS2B02G161700 , TraesCS1B02G332400 , TraesCS3B02G353200 , TraesCS1A02G320200 , TraesCS2A02G183900 , TraesCS1D02G320000 , TraesCS2D02G191800 , TraesCS3A02G324100 , TraesCS2B02G210600 , TraesCS3D02G317600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G180300 | LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed | - |
| 2 | Sobic.007G068700 | polyphenol oxidase, putative, expressed | K00422: polyphenol oxidase |
| 3 | Sobic.003G062900 | OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed | K16297: serine carboxypeptidase-like clade II |
| 4 | Sobic.001G153800 | Os10bglu34 - beta-glucosidase homologue, similar to Os3bglu6, expressed | K01188: beta-glucosidase |
| 5 | Sobic.006G059400 | - | - |
| 6 | Sobic.003G070200 | THION18 - Plant thionin family protein precursor, expressed | - |
| 7 | Sobic.001G359100 | cytochrome P450, putative, expressed | - |
| 8 | Sobic.002G334400 | CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed | - |
| 9 | Sobic.002G260100 | - | - |
| 10 | Sobic.002G305400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed | - |
| 11 | Sobic.004G089400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed | - |
| 12 | Sobic.009G087900 | transmembrane amino acid transporter protein, putative, expressed | - |
| 13 | Sobic.006G067300 | OsFBX103 - F-box domain containing protein, expressed | - |
| 14 | Sobic.005G006701 | - | - |
| 15 | Sobic.010G005900 | nodulin, putative, expressed | - |
| 16 | Sobic.008G057500 | Aldehyde dehydrogenase 3 H1(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed | K00128: aldehyde dehydrogenase (NAD+) |
| 17 | Sobic.004G218100 | Protein octadecanal decarbonylase CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed | K15404: K15404, aldehyde decarbonylase |
| 18 | Sobic.004G149200 | ankyrin, putative, expressed | - |
| 19 | Sobic.010G200900 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 20 | Sobic.002G007500 | 3-5 exonuclease domain-containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
