Gene annotation
Transcriptome id Sobic.004G089400.6,Sobic.004G089400.3,Sobic.004G089400.7,Sobic.004G089400.2,Sobic.004G089400.4,Sobic.004G089400.5,Sobic.004G089400.8,Sobic.004G089400.1
Synonym ATATH7, Sb04g007400, ATH7
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1Z5RLK8 , A0A194YNI0 , A0A194YNG7 , A0A194YNL4 , A0A194YPM3 , A0A1Z5RMM0 , A0A1Z5RLK6 , A0A1Z5RMD3
Pfam PF00005 PF12698 PF12698 PF00005
Panther DB PTHR19229 PTHR19229:SF127
NCBI CDD KOG0059; Lipid exporter ABCA1 and related proteins, ABC superfamily
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G47790 : ABC2 homolog 7
RAP-DB (Rice) LOC_Os08g30770.1,LOC_Os06g38950.1,LOC_Os02g11960.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a020217
Brachypodium -
Barley HORVU6Hr1G038520.38 , HORVU6Hr1G038520.39 , HORVU6Hr1G038520.34 , HORVU6Hr1G038520.35 , HORVU6Hr1G038520.36 , HORVU6Hr1G038520.37 , HORVU6Hr1G038520.30 , HORVU6Hr1G038520.31 , HORVU6Hr1G038520.32 , HORVU6Hr1G038520.33 , HORVU6Hr1G038520.16 , HORVU6Hr1G038520.17 , HORVU6Hr1G038520.14 , HORVU6Hr1G038520.15 , HORVU6Hr1G038520.12 , HORVU6Hr1G038520.13 , HORVU6Hr1G038520.10 , HORVU6Hr1G038520.11 , HORVU6Hr1G038520.18 , HORVU6Hr1G038520.19 , HORVU6Hr1G038520.4 , HORVU6Hr1G038520.5 , HORVU6Hr1G038520.6 , HORVU6Hr1G038520.1 , HORVU6Hr1G038520.2 , HORVU6Hr1G038520.3 , HORVU6Hr1G038520.8 , HORVU6Hr1G038520.9 , HORVU6Hr1G038520.41 , HORVU6Hr1G038520.40 , HORVU6Hr1G038520.42 , HORVU6Hr1G038520.28 , HORVU6Hr1G038520.27 , HORVU6Hr1G038520.26 , HORVU6Hr1G038520.25 , HORVU6Hr1G038520.24 , HORVU6Hr1G038520.23 , HORVU6Hr1G038520.22 , HORVU6Hr1G038520.21 , HORVU6Hr1G038520.20
Wheat TraesCS6B02G211300 , TraesCS6A02G183200 , TraesCS6D02G170100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G006701 - -
2 Sobic.004G149200 ankyrin, putative, expressed -
3 Sobic.003G062900 OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
4 Sobic.010G043300 expressed protein -
5 Sobic.002G260100 - -
6 Sobic.006G059400 - -
7 Sobic.006G067300 OsFBX103 - F-box domain containing protein, expressed -
8 Sobic.003G070200 THION18 - Plant thionin family protein precursor, expressed -
9 Sobic.001G359100 cytochrome P450, putative, expressed -
10 Sobic.007G010350 - -
11 Sobic.001G153800 Os10bglu34 - beta-glucosidase homologue, similar to Os3bglu6, expressed K01188: beta-glucosidase
12 Sobic.001G092700 - -
13 Sobic.002G334400 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
14 Sobic.001G215201 - -
15 Sobic.009G180300 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
16 Sobic.003G164300 cullin, putative, expressed K03347: CUL1, cullin 1
17 Sobic.008G101850 - -
18 Sobic.008G057500 Aldehyde dehydrogenase 3 H1(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
19 Sobic.001G092650 - -
20 Sobic.009G087900 transmembrane amino acid transporter protein, putative, expressed -


Gene co-expression network
sample Sobic004G089400 Sobic004G089400 Sobic005G006701 Sobic005G006701 Sobic004G089400--Sobic005G006701 Sobic004G149200 Sobic004G149200 Sobic004G089400--Sobic004G149200 Sobic003G062900 Sobic003G062900 Sobic004G089400--Sobic003G062900 Sobic010G043300 Sobic010G043300 Sobic004G089400--Sobic010G043300 Sobic002G260100 Sobic002G260100 Sobic004G089400--Sobic002G260100 Sobic006G059400 Sobic006G059400 Sobic004G089400--Sobic006G059400 Sobic006G067300 Sobic006G067300 Sobic004G089400--Sobic006G067300 Sobic003G070200 Sobic003G070200 Sobic004G089400--Sobic003G070200 Sobic001G359100 Sobic001G359100 Sobic004G089400--Sobic001G359100 Sobic005G006701--Sobic004G089400 Sobic005G006701--Sobic010G043300 Sobic005G006701--Sobic004G149200 Sobic007G010350 Sobic007G010350 Sobic005G006701--Sobic007G010350 Sobic005G006701--Sobic006G067300 Sobic005G006701--Sobic002G260100 Sobic001G092700 Sobic001G092700 Sobic005G006701--Sobic001G092700 Sobic005G006701--Sobic003G062900 Sobic003G164300 Sobic003G164300 Sobic005G006701--Sobic003G164300 Sobic004G149200--Sobic004G089400 Sobic004G149200--Sobic005G006701 Sobic004G149200--Sobic010G043300 Sobic004G149200--Sobic006G067300 Sobic004G149200--Sobic007G010350 Sobic004G149200--Sobic003G062900 Sobic004G149200--Sobic002G260100 Sobic004G149200--Sobic001G092700 Sobic004G149200--Sobic006G059400 Sobic003G062900--Sobic006G059400 Sobic003G062900--Sobic001G359100 Sobic003G062900--Sobic003G070200 Sobic001G153800 Sobic001G153800 Sobic003G062900--Sobic001G153800 Sobic003G062900--Sobic002G260100 Sobic002G334400 Sobic002G334400 Sobic003G062900--Sobic002G334400 Sobic009G087900 Sobic009G087900 Sobic003G062900--Sobic009G087900 Sobic002G305400 Sobic002G305400 Sobic003G062900--Sobic002G305400 Sobic003G062900--Sobic004G089400 Sobic010G043300--Sobic005G006701 Sobic007G219300 Sobic007G219300 Sobic010G043300--Sobic007G219300 Sobic010G043300--Sobic007G010350 Sobic001G092650 Sobic001G092650 Sobic010G043300--Sobic001G092650 Sobic003G180700 Sobic003G180700 Sobic010G043300--Sobic003G180700 Sobic001G355300 Sobic001G355300 Sobic010G043300--Sobic001G355300 Sobic010G043300--Sobic001G092700 Sobic009G067100 Sobic009G067100 Sobic010G043300--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic010G043300--Sobic007G083500 Sobic002G260100--Sobic006G059400 Sobic002G260100--Sobic001G359100 Sobic002G260100--Sobic003G070200 Sobic002G260100--Sobic001G153800 Sobic002G260100--Sobic003G062900 Sobic002G260100--Sobic002G334400 Sobic002G260100--Sobic009G087900 Sobic002G260100--Sobic002G305400 Sobic002G260100--Sobic004G089400 Sobic006G059400--Sobic001G359100 Sobic006G059400--Sobic003G070200 Sobic006G059400--Sobic001G153800 Sobic006G059400--Sobic002G334400 Sobic006G059400--Sobic002G260100 Sobic006G059400--Sobic003G062900 Sobic006G059400--Sobic009G087900 Sobic006G059400--Sobic002G305400 Sobic010G005900 Sobic010G005900 Sobic006G059400--Sobic010G005900 Sobic006G067300--Sobic005G006701 Sobic006G067300--Sobic003G164300 Sobic006G067300--Sobic004G089400 Sobic006G067300--Sobic010G043300 Sobic009G180300 Sobic009G180300 Sobic006G067300--Sobic009G180300 Sobic006G067300--Sobic004G149200 Sobic006G067300--Sobic007G010350 Sobic008G057500 Sobic008G057500 Sobic006G067300--Sobic008G057500 Sobic006G067300--Sobic001G092700 Sobic003G070200--Sobic001G359100 Sobic003G070200--Sobic006G059400 Sobic003G070200--Sobic001G153800 Sobic003G070200--Sobic002G334400 Sobic003G070200--Sobic009G087900 Sobic003G070200--Sobic002G305400 Sobic003G070200--Sobic002G260100 Sobic003G070200--Sobic003G062900 Sobic003G070200--Sobic010G005900 Sobic001G359100--Sobic003G070200 Sobic001G359100--Sobic006G059400 Sobic001G359100--Sobic001G153800 Sobic001G359100--Sobic002G334400 Sobic001G359100--Sobic009G087900 Sobic001G359100--Sobic002G305400 Sobic001G359100--Sobic002G260100 Sobic001G359100--Sobic003G062900 Sobic001G359100--Sobic010G005900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.