Gene annotation
| Transcriptome id | Sobic.003G062900.2 |
|---|---|
| Synonym | Sb03g005370, SCPL27 |
| Functional annotation | OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed |
| UniProt | C5XP87 |
| Pfam | PF00450 |
| Panther DB | PTHR11802 PTHR11802:SF106 |
| NCBI CDD | KOG1282; Serine carboxypeptidases (lysosomal cathepsin A) |
| KEGG Orthology | K16297; serine carboxypeptidase-like clade II |
| Gene Ontology | GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity |
Orthologs (automatic annotation)
| TAIR | AT3G07990 : serine carboxypeptidase-like 27 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g06490.1 : OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed |
| MaizeGDB (Corn) | Zm00025a023353 |
| Brachypodium | - |
| Barley | HORVU3Hr1G087470.24 , HORVU3Hr1G087470.25 , HORVU3Hr1G087470.20 , HORVU3Hr1G087470.21 , HORVU3Hr1G087470.22 , HORVU3Hr1G087470.23 , HORVU3Hr1G087470.8 , HORVU3Hr1G087470.11 , HORVU3Hr1G087470.10 , HORVU3Hr1G087470.13 , HORVU3Hr1G087470.12 , HORVU3Hr1G087470.15 , HORVU3Hr1G087470.17 , HORVU3Hr1G087470.16 , HORVU3Hr1G087470.19 , HORVU3Hr1G087470.18 , HORVU3Hr1G025680.6 , HORVU3Hr1G025680.7 , HORVU3Hr1G025680.4 , HORVU3Hr1G025680.5 , HORVU3Hr1G025680.2 , HORVU3Hr1G025680.1 , HORVU3Hr1G087470.5 , HORVU3Hr1G087470.4 , HORVU3Hr1G087470.7 , HORVU3Hr1G087470.6 , HORVU3Hr1G087470.1 , HORVU3Hr1G087470.3 , HORVU3Hr1G087470.2 |
| Wheat | TraesCS3B02G384800 , TraesCS3B02G153200 , TraesCS3B02G153200 , TraesCS3B02G153200 , TraesCS3A02G310100 , TraesCS3A02G352200 |
| Populus | PNT29548 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G059400 | - | - |
| 2 | Sobic.001G359100 | cytochrome P450, putative, expressed | - |
| 3 | Sobic.003G070200 | THION18 - Plant thionin family protein precursor, expressed | - |
| 4 | Sobic.001G153800 | Os10bglu34 - beta-glucosidase homologue, similar to Os3bglu6, expressed | K01188: beta-glucosidase |
| 5 | Sobic.002G260100 | - | - |
| 6 | Sobic.002G334400 | CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed | - |
| 7 | Sobic.009G087900 | transmembrane amino acid transporter protein, putative, expressed | - |
| 8 | Sobic.002G305400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed | - |
| 9 | Sobic.004G089400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed | - |
| 10 | Sobic.005G006701 | - | - |
| 11 | Sobic.010G005900 | nodulin, putative, expressed | - |
| 12 | Sobic.004G149200 | ankyrin, putative, expressed | - |
| 13 | Sobic.009G187700 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 14 | Sobic.009G180300 | LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed | - |
| 15 | Sobic.003G206100 | THION27 - Plant thionin family protein precursor, expressed | - |
| 16 | Sobic.001G215201 | - | - |
| 17 | Sobic.007G068700 | polyphenol oxidase, putative, expressed | K00422: polyphenol oxidase |
| 18 | Sobic.006G251301 | - | - |
| 19 | Sobic.006G067300 | OsFBX103 - F-box domain containing protein, expressed | - |
| 20 | Sobic.010G200900 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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